Table 3 Overview of the major features offered by IAT systems.
Team | Team 61 | Team 65 | Team 68 | Team 78 | Team 89 | Team 93 |
|---|---|---|---|---|---|---|
System | Myminer | Odin | GeneView | U.Iowa | U. Wisconsin | GNSuite |
Process full text | No | Yes | Yes | Yes | Yes | Yes |
GN | Yes | Yes | Yes | Yes | Yes | Yes |
GN task input | Text | PMCID or PMID | PMCID or PMID | PMCID | PMCID | PMCID or PMID |
Gene ranking | No | Yes | Yes | Yes | Yes | Yes |
Result sorting capabilities | No | Yes | Yes | Yes | Yes | Yes |
Document retrieval based on Gene ID | No | Yes | Yes | No | Yes | Yes |
Document retrieval based on Gene name | No | Yes | Yes | Yes | Yes | No |
Remove or add species and/or genes (e.g., add a gene mention not detected by the system) | Remove and add both species and genes | Remove species and genes/proteins. Add species and genes that can be associated with a term in document | No | No | Remove and add genes | Remove a gene or add it back (cannot add new) |
Link to external databases (gene mentions or species linked out to external databases) | UniProt, NCBI taxonomy, and MIM | Entrez Gene UniProt | Entrez Gene, KEGG, UniProt, Interpro, GO, DIP, Intact, MIPS, MINT HPRD, dbSNP | Entrez Gene, NCBI taxonomy | Entrez Gene | Entrez Gene, NCBI taxonomy |
Interface data display for GN | Multiple boxes with abstract, species and protein information | Panels with information linked interactively | Panels with information linked interactively | Panels with linked information | Table | Summary Table |
Export Results (gene list with database identifiers) | Saves tagged abstract | Tabular format | Tabular format | Tabular format, need to specify before querying | Tabular format | Tabular format |