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Table 3 Overview of the major features offered by IAT systems.

From: BioCreative III interactive task: an overview

Team Team 61 Team 65 Team 68 Team 78 Team 89 Team 93
System Myminer Odin GeneView U.Iowa U. Wisconsin GNSuite
Process full text No Yes Yes Yes Yes Yes
GN Yes Yes Yes Yes Yes Yes
GN task input Text PMCID or PMID PMCID or PMID PMCID PMCID PMCID or PMID
Gene ranking No Yes Yes Yes Yes Yes
Result sorting capabilities No Yes Yes Yes Yes Yes
Document retrieval based on Gene ID No Yes Yes No Yes Yes
Document retrieval based on Gene name No Yes Yes Yes Yes No
Remove or add species and/or genes (e.g., add a gene mention not detected by the system) Remove and add both species and genes Remove species and genes/proteins. Add species and genes that can be associated with a term in document No No Remove and add genes Remove a gene or add it back (cannot add new)
Link to external databases (gene mentions or species linked out to external databases) UniProt, NCBI taxonomy, and MIM Entrez Gene UniProt Entrez Gene, KEGG, UniProt, Interpro, GO, DIP, Intact, MIPS, MINT HPRD, dbSNP Entrez Gene, NCBI taxonomy Entrez Gene Entrez Gene, NCBI taxonomy
Interface data display for GN Multiple boxes with abstract, species and protein information Panels with information linked interactively Panels with information linked interactively Panels with linked information Table Summary Table
Export Results (gene list with database identifiers) Saves tagged abstract Tabular format Tabular format Tabular format, need to specify before querying Tabular format Tabular format