TY - CHAP AU - Alex, B. AU - Grover, C. AU - Haddow, B. AU - Kabadjov, M. AU - Klein, E. AU - Matthews, M. AU - Roebuck, S. AU - Tobin, R. AU - Wang, X. PY - 2008 DA - 2008// TI - Assisted curation: does text mining really help? BT - Pac Symp Biocomput ID - Alex2008 ER - TY - JOUR AU - Hakenberg, J. AU - Plake, C. AU - Leaman, R. AU - Schroeder, M. AU - Gonzalez, G. PY - 2008 DA - 2008// TI - Inter-species normalization of gene mentions with GNAT JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn299 DO - 10.1093/bioinformatics/btn299 ID - Hakenberg2008 ER - TY - CHAP AU - Heinz, J. F. AU - Mevissen, T. AU - Dach, H. AU - Oster, M. AU - Hofmann-Apitius, M. PY - 2007 DA - 2007// TI - ProMiner: Recognition of Human Gene and Protein Names using regularly updated Dictionaries BT - the Second BioCreative Challenge Evaluation Workshop ID - Heinz2007 ER - TY - JOUR AU - Hirschman, L. AU - Colosimo, M. AU - Morgan, A. AU - Yeh, A. PY - 2005 DA - 2005// TI - Overview of BioCreAtIvE task 1B: normalized gene lists JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S11 DO - 10.1186/1471-2105-6-S1-S11 ID - Hirschman2005 ER - TY - JOUR AU - Leitner, F. AU - Mardis, S. A. AU - Krallinger, M. AU - Cesareni, G. AU - Hirschman, L. A. AU - Valencia, A. PY - 2010 DA - 2010// TI - An Overview of BioCreative II.5 JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.61 DO - 10.1109/TCBB.2010.61 ID - Leitner2010 ER - TY - JOUR AU - Morgan, A. A. AU - Lu, Z. AU - Wang, X. AU - Cohen, A. M. AU - Fluck, J. AU - Ruch, P. AU - Divoli, A. AU - Fundel, K. AU - Leaman, R. AU - Hakenberg, J. PY - 2008 DA - 2008// TI - Overview of BioCreative II gene normalization JO - Genome Biology VL - 9 UR - https://doi.org/10.1186/gb-2008-9-s2-s3 DO - 10.1186/gb-2008-9-s2-s3 ID - Morgan2008 ER - TY - CHAP AU - Wermter, J. AU - Tomanek, K. AU - Hahn, U. PY - 2009 DA - 2009// TI - High-Performance Gene Name Normalization with GENO BT - Bioinformatics ID - Wermter2009 ER - TY - JOUR AU - Wang, X. AU - Tsujii, J. i. AU - Ananiadou, S. PY - 2010 DA - 2010// TI - Disambiguating the Species of Biomedical Named Entities using Natural Language Parsers JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq002 DO - 10.1093/bioinformatics/btq002 ID - Wang2010 ER - TY - CHAP AU - Gerner, M. AU - Nenadic, G. AU - Bergman, C. M. PY - 2010 DA - 2010// TI - LINNAEUS: A species name identification system for biomedical literature BT - BMC Bioinformatics ID - Gerner2010 ER - TY - CHAP AU - Kappeler, T. AU - Kaljurand, K. AU - Rinaldi, F. PY - 2009 DA - 2009// TI - TX Task:Automatic Detection of Focus Organisms in Biomedical Publications BT - Proceedings of the Workshop on BioNLP: 2009 UR - https://doi.org/10.3115/1572364.1572375 DO - 10.3115/1572364.1572375 ID - Kappeler2009 ER - TY - JOUR AU - Klinger, R. AU - Kolarik, C. AU - Fluck, J. AU - Hofmann-Apitius, M. AU - Friedrich, C. M. PY - 2008 DA - 2008// TI - Detection of IUPAC and IUPAC-like chemical names JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn181 DO - 10.1093/bioinformatics/btn181 ID - Klinger2008 ER - TY - CHAP AU - Corbett, P. AU - Batchelor, C. AU - Teufel, S. PY - 2007 DA - 2007// TI - Annotation of Chemical Named Entities BT - BioNLP 2007: Biological, translational, and clinical language processing UR - https://doi.org/10.3115/1572392.1572403 DO - 10.3115/1572392.1572403 ID - Corbett2007 ER - TY - JOUR AU - Hakenberg, J. AU - Plake, C. AU - Royer, L. AU - Strobelt, H. AU - Leser, U. AU - Schroeder, M. PY - 2008 DA - 2008// TI - Gene mention normalization and interaction extraction with context models and sentence motifs JO - Genome Biology VL - 9 UR - https://doi.org/10.1186/gb-2008-9-s2-s14 DO - 10.1186/gb-2008-9-s2-s14 ID - Hakenberg2008 ER - TY - JOUR AU - Hakenberg, J. AU - Leaman, R. AU - Vo, N. H. AU - Jonnalagadda, S. AU - Miller, R. S. C. AU - Tari, L. AU - Baral, C. AU - Gonzalez, G. PY - 2010 DA - 2010// TI - Efficient Extraction of Protein-Protein Interactions from Full-Text Articles JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.51 DO - 10.1109/TCBB.2010.51 ID - Hakenberg2010 ER - TY - JOUR AU - Chen, Y. AU - Liu, F. AU - Manderick, B. PY - 2010 DA - 2010// TI - BioLMiner System: Interaction Normalization Task and Interaction Pair Task in the BioCreative II.5 Challenge JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.47 DO - 10.1109/TCBB.2010.47 ID - Chen2010 ER - TY - JOUR AU - Verspoor, K. AU - Roeder, C. AU - Johnson, H. L. AU - Cohen, K. B. AU - W, A. B. AU - Hunter, L. E. PY - 2010 DA - 2010// TI - Exploring Species-Based Strategies for Gene Normalization JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.48 DO - 10.1109/TCBB.2010.48 ID - Verspoor2010 ER - TY - JOUR AU - Saetre, R. AU - Yoshida, K. AU - Miwa, M. AU - Matsuzaki, T. AU - Kano, Y. AU - Tsujii, J. i. PY - 2010 DA - 2010// TI - Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.46 DO - 10.1109/TCBB.2010.46 ID - Saetre2010 ER - TY - JOUR AU - Dai, H. J. AU - Lai, P. T. AU - Tsai, R. T. H. PY - 2010 DA - 2010// TI - Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles JO - IEEE/ACM Transactions On Computational Biology And Bioinformatics VL - 7 UR - https://doi.org/10.1109/TCBB.2010.45 DO - 10.1109/TCBB.2010.45 ID - Dai2010 ER - TY - JOUR AU - Maglott, D. AU - Ostell, J. AU - Pruitt, K. D. AU - Tatusova, T. PY - 2006 DA - 2006// TI - Entrez Gene: gene-centered information at NCBI JO - Nucleic acids research VL - 00 ID - Maglott2006 ER - TY - JOUR AU - Hirschman, L. AU - Morgan, A. A. AU - Yeh, A. S. PY - 2002 DA - 2002// TI - Rutabaga by any other name: extracting biological names JO - J of Biomedical Informatics VL - 35 UR - https://doi.org/10.1016/S1532-0464(03)00014-5 DO - 10.1016/S1532-0464(03)00014-5 ID - Hirschman2002 ER - TY - CHAP AU - Tuason, O. AU - Chen, L. AU - Liu, H. AU - Blake, J. A. AU - Friedman, C. PY - 2004 DA - 2004// TI - Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity BT - Proc Pacific Symp on Biocomputing ID - Tuason2004 ER - TY - JOUR AU - Hsu, C. N. AU - Chang, Y. M. AU - Kuo, C. J. AU - Lin, Y. S. AU - Huang, H. S. AU - Chung, I. F. PY - 2008 DA - 2008// TI - Integrating High Dimensional Bi-directional Parsing Models for Gene Mention Tagging JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn183 DO - 10.1093/bioinformatics/btn183 ID - Hsu2008 ER - TY - CHAP AU - Wei, C. H. AU - Huang, I. C. AU - Hsu, Y. Y. AU - Kao, H. Y. PY - 2009 DA - 2009// TI - Normalizing Biomedical Name Entities by Similarity-Based Inference Network and De-ambiguity Mining BT - Ninth IEEE International Conference on Bioinformatics and Bioengineering Workshop: Semantic Biomedical Computing: 2009; Taichung, Taiwan UR - https://doi.org/10.1109/BIBE.2009.41 DO - 10.1109/BIBE.2009.41 ID - Wei2009 ER - TY - CHAP AU - Lu, Z. AU - Wilbur, W. J. PY - 2010 DA - 2010// TI - Overview of BioCreative III Gene Normalization BT - BioCreative III Workshop PB - Maryland CY - Bethesda ID - Lu2010 ER - TY - JOUR AU - Carroll, H. D. AU - Kann, M. G. AU - Sheetlin, S. L. AU - Spouge, J. L. PY - 2010 DA - 2010// TI - Threshold Average Precision (TAP-k): A Measure of Retrieval Designed for Bioinformatics JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq270 DO - 10.1093/bioinformatics/btq270 ID - Carroll2010 ER - TY - JOUR AU - Settles, B. PY - 2005 DA - 2005// TI - ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti475 DO - 10.1093/bioinformatics/bti475 ID - Settles2005 ER - TY - JOUR AU - Kim, J. D. AU - Ohta, T. AU - Tateisi, Y. AU - Tsujii, J. PY - 2003 DA - 2003// TI - GENIA corpus-a semantically annotated corpus for bio-textmining JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1023 DO - 10.1093/bioinformatics/btg1023 ID - Kim2003 ER -