Skip to main content

Table 9 Performance on the gene normalization task by the top 4 performing teams in the BioCreative III competition

From: Cross-species gene normalization by species inference

Teams

 

Gold standard (50 selected articles)

Silver standard (50 selected articles)

Silver standard (All 507 articles)

  

TAP-5

TAP-10

TAP-20

TAP-5

TAP-10

TAP-20

TAP-5

TAP-10

TAP-20

Kuo et al. (Team 74)

1st run

0.2137

0.2509

0.2509

0.3820

0.3820

0.3820

0.4873

0.4873

0.4873

 

2nd run

0.2083

0.2480

0.2480

0.3855

0.3855

0.3855

0.4871

0.4871

0.4871

 

3rd run

0.2099

0.2495

0.2495

0.3890

0.3890

0.3890

0.4916

0.4916

0.4916

Our method (Team 83)

1st run

0.3254

0.3538

0.3535

0.3567

0.3600

0.3600

0.4591

0.4591

0.4591

 

2nd run

0.3216

0.3435

0.3435

0.3291

0.3291

0.3291

0.4323

0.4323

0.4323

 

3rd run

0.3297

0.3514

0.3514

0.3382

0.3382

0.3382

0.4327

0.4327

0.4327

Liu et al. (Team 98)

1st run

0.2835

0.3012

0.3103

0.3343

0.3535

0.3629

0.3818

0.3899

0.3875

 

2nd run

0.2909

0.3079

0.3087

0.3354

0.3543

0.3634

0.3790

0.3878

0.3868

 

3rd run

0.3013

0.3183

0.3303

0.3710

0.4116

0.4672

0.4086

0.4511

0.4648

Lai et al. (Team 101)

1st run

0.1896

0.2288

0.2385

0.3590

0.3859

0.3859

0.4289

0.4289

0.4289

 

2nd run

0.1672

0.2150

0.2418

0.3239

0.3945

0.4132

0.4294

0.4408

0.4408

 

3rd run

0.1812

0.2141

0.2425

0.3258

0.4109

0.4109

0.4536

0.4536

0.4536