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Table 7 Analysis of Submitted Runs on the BioCreative III GN test corpus

From: Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization

Annotation

Run

GN records

False-Positives

False-Negatives

  

Min

Median

Max

Min

Median

Max

Total (%)

 

Truth

1

19

375

    

test50.gold

R1

1

18

80

1

9

35

1283 (76.87)

 

R2

1

19

82

1

10

44

1277 (76.51)

 

R3

1

19

84

1

10

45

1275 (76.39)

 

Truth

1

36

219

    

test50.silver

R1

1

18

80

1

2

14

1072 (58.64)

 

R2

1

19

82

1

3

20

1039 (56.83)

 

R3

1

19

84

1

3

20

1031 (56.40)

 

Truth

1

12

375

    

test507.silver1

R1

1

9

80

1

1

35

5342 (56.96)

 

R2

1

9

82

1

1

44

5296 (56.47)

 

R3

1

10

84

1

2

45

5249 (55.97)

 

Truth

1

11

219

    

test507.silver2

R1

1

9

80

1

1

14

4927 (52.84)

 

R2

1

9

82

1

1

20

4858 (52.10)

 

R3

1

10

84

1

1

20

4805 (51.53)