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Table 6 BioCreative III average vs. Static vs. Section-wide vs. BioCreative III top systems on silver test set

From: Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection

Configuration

Test set silver standard 50

Test set silver standard 507

 

TAP5

TAP10

TAP20

TAP5

TAP10

TAP20

BioCreative III Average (Baseline)

0.2175

0.2499

0.2690

0.2930

0.3062

0.3109

Static strategy

(Team _101_R3)

0.3506

(+0.1331, +61.20%)

0.3942

(+0.1443, +57.74%)

0.3942

(+0.1252, +46.54%)

0.4351

(+0.1421, +48.50%)

0.4351

(+0.1289, +42.10%)

0.4351

(+0.1242, +39.95%)

Dynamic strategy:

Section-wide species

0.3532

(+0.1357, +62.39%)

0.4048

(+0.1549, +61.98%)

0.4024

(+0.1334, +49.59%)

0.4951

(+0.2010, +68.98%)

0.4401

(+0.1339, +43.73%)

0.4401

(+0.1339, +43.73%)

Team_74_R3

0.3747

0.3747

0.3747

0.4555

0.4555

0.4555

Team_98_R3

0.3576

0.3953

0.4499

0.4086

0.4511

0.4648

Team_83_R1

0.3498

0.3531

0.3531

0.4581

0.4581

0.4581