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Table 4 Performance results for corrected PPI classification on the ACT test set.

From: Classifying protein-protein interaction articles using word and syntactic features

 

Run 2

Run 2’

Run 4

Run 4’

TP

516

529

531

556

FP

257

271

288

311

FN

394

381

379

354

TN

4833

4819

4802

4779

Accuracy

0.8915

0.8913

0.8888

0.8892

Specificity

0.9495

0.9468

0.9434

0.9389

Sensitivity

0.5670

0.5813

0.5835

0.6110

F1 score

0.6132

0.6187

0.6142

0.6258

MCC

0.55306

0.55722

0.55054

0.56100

AUC iP/R

0.6796

0.6806

0.6798

0.6834

  1. Run 2’ and Run 4’ are the corrected performance results for Run 2 and Run 4 respectively. For the official runs, gene names consisting of more than a single word were not treated as a single entity. Only this issue was fixed for Run 2’ and Run 4’.
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BMC Bioinformatics

ISSN: 1471-2105

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