Table 1 Properties of gene clusters from Bacteria. Notation is defined in the Methods section.
From: Origin and evolution of gene families in Bacteria and Archaea
Clustering parameters | Distribution of clusters across genomes | Distribution of family sizes across genomes | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
E cut | f min | G tot | G(1) | G core |
| F tot | F(1) | F large |
| n max |
1e-30 | 0.8 | 151049 | 128755 | 56 | 1.78 | 2928 | 2682 | 8.9 | 1.18 | 150 |
1e-30 | 0.7 | 143623 | 121073 | 68 | 1.84 | 2877 | 2614 | 9.5 | 1.20 | 182 |
1e-30 | 0.6 | 139204 | 116677 | 81 | 1.88 | 2838 | 2566 | 10.5 | 1.21 | 189 |
1e-20 | 0.8 | 129357 | 108673 | 66 | 1.97 | 2765 | 2470 | 12.0 | 1.24 | 187 |
1e-20 | 0.7 | 119492 | 98717 | 79 | 2.07 | 2689 | 2372 | 13.4 | 1.28 | 189 |
1e-20 | 0.6 | 113318 | 92701 | 96 | 2.13 | 2625 | 2295 | 13.2 | 1.31 | 311 |
1e-10 | 0.8 | 109361 | 91573 | 78 | 2.13 | 2537 | 2199 | 17.6 | 1.35 | 189 |
1e-10 | 0.7 | 96666 | 79084 | 98 | 2.29 | 2408 | 2043 | 19.5 | 1.42 | 200 |
1e-10 | 0.6 | 88270 | 71113 | 119 | 2.40 | 2301 | 1921 | 20.1 | 1.48 | 452 |
1e-5 | 0.8 | 101042 | 84903 | 88 | 2.15 | 2365 | 2016 | 23.3 | 1.45 | 214 |
1e-5 | 0.7 | 86857 | 71156 | 107 | 2.33 | 2203 | 1832 | 25.2 | 1.55 | 500 |
1e-5 | 0.6 | 77111 | 62136 | 123 | 2.43 | 2038 | 1667 | 25.9 | 1.68 | 791 |
