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Table 3 Results of STELLAR on drosophila chromosomes

From: STELLAR: fast and exact local alignments

error rate min. length running time num. of ε-matches overlap BLASTa
10% 100 7777 s 3911 100%
10% 200 1566 s 345 100%
5% 200 21 s 44 100%
  1. We used chromosome arm 2L from D. melanogaster (~23.5 Mb) and group 3 of chromosome 4 from D.pseudoobscura (~11.7Mb). STELLAR was run with the X-drop parameter set to 20.
  2. a Percentage of covered local alignments from accordingly filtered BLAST output.