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Table 3 Results of STELLAR on drosophila chromosomes

From: STELLAR: fast and exact local alignments

error rate

min. length

running time

num. of ε-matches

overlap BLASTa

10%

100

7777 s

3911

100%

10%

200

1566 s

345

100%

5%

200

21 s

44

100%

  1. We used chromosome arm 2L from D. melanogaster (~23.5 Mb) and group 3 of chromosome 4 from D.pseudoobscura (~11.7Mb). STELLAR was run with the X-drop parameter set to 20.
  2. a Percentage of covered local alignments from accordingly filtered BLAST output.
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BMC Bioinformatics

ISSN: 1471-2105

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