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Table 4 Results of BLAST on drosophila chromosomes

From: STELLAR: fast and exact local alignments

word size

running time

num. of hits

overlap STELLAR 200b

overlap STELLAR 100b

default

9 s

9504

95.1%

89.6%

8

2175 s

29597

100.0%

99.7%

  1. We used chromosome arm 2L from D. melanogaster (~23.5 Mb) and group 3 of chromosome 4 from D.pseudoobscura (~11.7Mb).
  2. a Percentage of covered STELLAR matches (error rate 10%, minimal length 200 or 100).
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BMC Bioinformatics

ISSN: 1471-2105

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