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Table 4 Results of BLAST on drosophila chromosomes

From: STELLAR: fast and exact local alignments

word size running time num. of hits overlap STELLAR 200b overlap STELLAR 100b
default 9 s 9504 95.1% 89.6%
8 2175 s 29597 100.0% 99.7%
  1. We used chromosome arm 2L from D. melanogaster (~23.5 Mb) and group 3 of chromosome 4 from D.pseudoobscura (~11.7Mb).
  2. a Percentage of covered STELLAR matches (error rate 10%, minimal length 200 or 100).
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BMC Bioinformatics

ISSN: 1471-2105

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