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Table 3 Comparison of different computations of orthologous clusters with SYNS results on the Genolevures data Each line compares a given method with the SYNS; we report the number of genes classified only in the given method (meth), only by the SYNS algorithm (SYNS), the similarity value (sim) between two cluster sets (varying between 0 and 1 as defined in [33]), the number of genes that appear as singletons, the number of splits and merges between two cluster sets as well as the number of unclassifiable cases (messy).

From: Identification of conserved gene clusters in multiple genomes based on synteny and homology

Method

Id

sim

meth

SYNS

singls

merges

splits

messy

OrthoMCL

3447

0.76

41

1794

1044

594

18

32

MultiParanoid

4325

0.26

4

20518

1988

4

121

1

Coco-cl

3632

0.82

42

793

774

383

511

103

GCFinder

470

0.24

769

9781

3417

749

4

46

SONS

4968

0.90

27

1158

874

141

51

70