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Table 1 MELTING 5 XML elements and attributes

From: MELTING, a flexible platform to predict the melting temperatures of nucleic acids

Element

Attribute(s)

data

type

neighbor

sequence

initiation

type

terminal

type

symmetry

 

mismatch

sequence, size, type, loop, closing

asymmetry

 

penalty

type

parameters

sequence

bulge

size, sequence, type

closure

type

modified

sequence, type, sens

CNG

sequence, repeats

dangling

sequence, sens

enthalpy

 

entropy

 
  1. Types of XML nodes and attributes found in thermodynamic files, defining enthalpy and entropy parameters in cal/mol.