Skip to main content

Table 4 Summary of the results in a realistic motif discovery scenario (see Table 3 )

From: Profile-based short linear protein motif discovery

  SLiMFinder MEME default MEME with weighting and RLC masking
Number returned 12 14 17
Number of first hits 7 0 5
Total 21 21 21
Number in Top Ten 12 6 12
Percentage Returned 76% 67% 81%
Percentage Top 10 57% 29% 57%
Percentage Top Hit 33% 0% 24%