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Table 4 Summary of the results in a realistic motif discovery scenario (see Table 3 )

From: Profile-based short linear protein motif discovery

 

SLiMFinder

MEME default

MEME with weighting and RLC masking

Number returned

12

14

17

Number of first hits

7

0

5

Total

21

21

21

Number in Top Ten

12

6

12

Percentage Returned

76%

67%

81%

Percentage Top 10

57%

29%

57%

Percentage Top Hit

33%

0%

24%