Table 1 The STAMP alignment of three structures of DNA polymerase I in different conformations
480 | 490 | 500 | 510 | 520 | |||
|---|---|---|---|---|---|---|---|
1KTQ | GHPFNLNSRDQLERVLFDELGLPAISTS—A-----AV-LE--A---LREA-HP | ||||||
2KTQ | GHPFNLNSRDQLERVLFDELGLP----AIGKTEKTGKRSTSAAVLEALREAHP | (a) | |||||
3KTQ | GHPFNLNSRDQLERVLFDELGLP----AIGKTEKTGKRSTSAAVLEALREAHP | ||||||
-H1----- | -H2--- | ||||||
640 | 650 | 660 | 670 | 680 | 690 | ||
1KTQ | EGRDIHTETASWMFGVPREAVD-PL--M--R--------- RAAKTINFG-VLYGMSAHRLSQEL-AIPYEEAQAFIERYFQS | ||||||
2KTQ | EGRDIHTETA----S-----D--PL--M--R---------RAAKTINFG-VLYGMSAHRLSQEL-AIPYEEAQAFIERYFQS | (b) | |||||
3KTQ | EGRDIHTET-------------ASWMFGVPREAVDPLMRRAA-KTINFGVL-YGMSAHRLSQELAIP-YEEAQAFIERYFQS | ||||||
----N----- | ----O------------------- | --O1-- | --O2---------- | ||||
710 | 740 | ||||||
1KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | ||||||
2KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | (c) | |||||
3KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | ||||||
-P------ | -10 | -11 | -------Q------------------------ | ||||