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Table 2 The MATT alignment of three structures of DNA polymerase I indifferent conformations

From: Multiple structure alignment with msTALI

 

480

490

500

510

520

 

1KTQ

GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRS-------TSAA----VLEALREAH

 

2KTQ

GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH

(a)

3KTQ

GHPFNLNSRDQLERVLFDELGLPA-----------IGKTEKTGKRSTSAAVLEALREAH

 
 

-H1-----

 

-H2---

 

640

650

660

670

680

690

 

1KTQ

EGRDIHTETASWMFGVPREAV---------------D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS

 

2KTQ

EGRDIHTETAS----------WMFGVPREAV-----D-----PLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS

(b)

3KTQ

EGRDIHTETAS--------------------WMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS

 
 

----N-----

 

----O-------

--O1--

--O2----------

 
 

710

 

740

   

1KTQ

TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF

 

2KTQ

TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF

(c)

3KTQ

TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF

 
 

-P------

-10

-11

-------Q------------------------