Table 3 The msTALI alignment of three structures of DNA polymerase I in different conformations
480 | 490 | 500 | 510 | 520 | |||
|---|---|---|---|---|---|---|---|
1KTQ | GHPFNLNSRDQLERVLFDELGLPAI---------STSAAVLEALREAHP | ||||||
2KTQ | GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHP | (a) | |||||
3KTQ | GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHP | ||||||
-H1----- | -H2--- | ||||||
640 | 650 | 660 | 670 | 680 | 690 | ||
1KTQ | EGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | ||||||
2KTQ | -GRDIHTETAS----------DPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | (b) | |||||
3KTQ | EGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS | ||||||
----N----- | ----O------- | --O1-- | --O2---------- | ||||
740 | |||||||
1KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | ||||||
2KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | (c) | |||||
3KTQ | TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF | ||||||
-P------ | -10 | -11 | -------Q------------------------ | ||||