Table 1 Performance of top scoring methods across all alignment performance tests
Method | Rank in Benchmark Test | Rank in Tree Resolution Test | Rank in Topological Congruence Test | Rank in Structural Accuracy Test | Mean rank |
|---|---|---|---|---|---|
MergeAlign91 | 8 | 20 | 2 | 9 | 9.8 |
MergeAlign80 | 9 | 8 | 9 | 14 | 10.0 |
MergeAlign70 | 5 | 14 | 17 | 5 | 10.3 |
MergeAlign30 | 1 | 23 | 10 | 11 | 11.3 |
MergeAlign60 | 3 | 31 | 6 | 8 | 12.0 |
CROG050101 | 13 | 5 | 29 | 6 | 13.3 |
CombAlign40 | 2 | 32 | 20 | 4 | 14.5 |
DOSZ010104 | 11 | 44 | 4 | 1 | 15.0 |
MergeAlign50 | 7 | 26 | 21 | 10 | 16.0 |
OVEJ920101 | 20 | 25 | 8 | 12 | 16.3 |
JOHM930101 | 21 | 12 | 15 | 18 | 16.5 |
MergeAlign20 | 6 | 11 | 37 | 13 | 16.8 |
BLOSUM80 | 22 | 22 | 1 | 24 | 17.3 |
BLOSUM62 | 18 | 10 | 27 | 22 | 19.3 |
MergeAlign10 | 10 | 6 | 57 | 7 | 20.0 |
PRLA000102 | 12 | 33 | 24 | 19 | 22.0 |
CSEM940101 | 24 | 15 | 47 | 3 | 22.3 |
DOSZ010103 | 4 | 27 | 60 | 2 | 23.3 |
PRLA000101 | 17 | 9 | 59 | 15 | 25.0 |
HENS920103 | 26 | 34 | 12 | 32 | 26.0 |