Table 3 Results for the simulation study for the case of having common CNVs
From: Bayesian model to detect phenotype-specific genes for copy number data
Bayesian Shared Model | |||||||
|---|---|---|---|---|---|---|---|
Multinomial | Posterior | Normal | Posterior | ||||
# SNPs | χ 2 | K-W | regression | Distribution | Approximation | Probability | |
high risk scenario (OR=2.0) | |||||||
TPR | 2000 | 100.00 | 0 | 100.00 | 100.00 | 100.00 | 100.00 |
TNR | 2000 | 100.00 | 100.00 | 100.00 | 99.98 | 99.99 | 99.96 |
TPR | 500 | 100.00 | 0 | 100.00 | 100.00 | 100.00 | 100.00 |
TNR | 500 | 99.73 | 100.00 | 99.73 | 99.99 | 99.95 | 99.80 |
moderate risk scenario (OR=1.5) | |||||||
TPR | 2000 | 60.25 | 0 | 56.75 | 75.25 | 75.50 | 75.00 |
TNR | 2000 | 99.95 | 100.00 | 99.95 | 99.98 | 99.99 | 99.95 |
TPR | 500 | 69.25 | 0 | 67.50 | 96.25 | 96.25 | 95.75 |
TNR | 500 | 99.81 | 100.00 | 99.81 | 99.96 | 99.99 | 99.98 |
low risk scenario (OR=1.2) | |||||||
TPR | 2000 | 0.75 | 0 | 0.75 | 10.50 | 10.25 | 10.25 |
TNR | 2000 | 99.99 | 100 | 99.9 | 100.00 | 100.00 | 99.98 |
TPR | 500 | 1.50 | 0 | 3.25 | 25.25 | 26.50 | 25.50 |
TNR | 500 | 99.99 | 100 | 99.99 | 99.99 | 99.99 | 99.98 |