Comparative study of classification algorithms for immunosignaturing data

Kukreja, Muskan; Johnston, Stephen Albert; Stafford, Phillip

doi:10.1186/1471-2105-13-139

BMC Bioinformatics

Table 10 Time performance (in ms) of classification algorithms on datasets

From: Comparative study of classification algorithms for immunosignaturing data

	Diabetes dataset				Alzheimer’s dataset				Antibodies dataset
p value<	5x10^-13	5x10^-10	5x10^-7	5x10^-4	5x10^-5	5x10^-4	5x10^-3	5x10^-2	5x10^-8	5x10^-7	5x10^-6	5x10^-5
R. Tree	337	408	571	1809	184	200	218	491	250	265	608	1478
KNN	265	333	585	3016	130	156	239	607	187	234	414	910
Hyper Pipes	226	274	630	2486	119	259	423	602	281	312	736	2180
Naïve Bayes	250	456	1120	4780	182	340	500	1158	265	362	892	2480
VFI	299	561	1384	7440	187	337	623	1357	280	368	1379	3000
J48	415	833	3718	16581	166	256	712	1385	468	880	3011	11731
K star	468	1387	4150	25974	187	260	666	2349	299	562	2340	6341
SVM	3313	3635	5304	10496	1054	1108	1389	2722	18297	18372	23712	29009
R. Forest	5717	11889	18254	50087	952	1852	4843	8032	5004	6749	13848	21452
M5P	701	2583	7717	50290	290	524	2324	8563	2632	4711	12033	23452
Bayes Net	718	2087	5653	55672	334	662	4996	9031	733	1140	3394	25000
K means	2618	6651	11876	85955	593	1123	7212	12405	850	908	3442	29658
SLR	11215	26380	79308	632840	1330	3413	22625	48215	17389	20649	89107	605365
LDA	683	1044	7994	658668	402	699	35568	869523	1512	2018	17373	632983
Logistic R.	1204	2592	24687	1589092	629	1651	48659	1146783	1654	9379	255103	1315256
ASC	864	3504	32836	5444533	518	1859	36849	2465021	1217	1763	25496	4565896
MLP	23759	314076	4572305	dnf	2057	30342	2789485	dnf	22916	156905	3277395	dnf

Table showing time performance in milliseconds on all level of significance for three datasets. MLP were among the slowest with dnf: “Did not finish”. Time measurements less than 10 seconds are marked in bold.

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ISSN: 1471-2105

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