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Table 1 Average cluster size, average Pearson correlation coefficient (〈 r 〉) and average clustering coefficients (〈 C 〉) of hydrophobic (BN), hydrophilic (IN), charged (CN), and all-amino-acids (AN) networks at different length scales viz. the long-range (LRN), short-range (SRN) and all-range (ARN) interaction networks are listed for I min = 0

From: Role of long- and short-range hydrophobic, hydrophilic and charged residues contact network in protein’s structural organization

Length scale

Type

Avg cluster size

r

C

LRN

BN

101.59 ± 53.66

0.13 ± 0.10

0.24 ± 0.05

 

IN

44.16 ± 13.03

-0.04 ± 0.19

0.14 ± 0.06

 

AN

350.5 ± 134.77

0.17 ± 0.07

0.16 ± 0.03

SRN

BN

38.55 ± 11.10

-0.11 ± 0.17

0.29 ± 0.08

 

AN

430.93 ± 145.06

0.21 ± 0.06

0.35 ± 0.03

ARN

BN

156.59 ± 70.75

0.27 ± 0.08

0.39 ± 0.03

 

IN

68.38 ± 41.33

0.15 ± 0.15

0.29 ± 0.06

 

CN

47.42 ± 18.34

0.14 ± 0.16

0.27 ± 0.07

 

AN

436.28 ± 141.01

0.30 ± 0.04

0.35 ± 0.01