Skip to main content

Table 6 Number of errors for simulated data

From: Error-correcting properties of the SOLiD Exact Call Chemistry

Space

Probe

Percentage

Percentage mapped with 0 – 5 errors

  
 

generator

mapped

0

1

2

3

4

5

Color

None

77.1

38.4

16.7

10.5

6.2

3.6

1.8

 

1β 0β 0

78.4

48.6

10.2

9.7

5.0

3.2

1.7

 

10β 00

78.3

48.4

10.3

9.7

5.0

3.2

1.7

 

1β 010

78.3

49.8

9.1

9.7

4.9

3.2

1.7

Base

None

47.2

38.4

2.3

1.6

1.8

1.8

1.2

 

1β 0β 0

64.3

49.6

4.7

2.1

3.1

2.6

2.1

 

10β 00

65.5

49.4

6.2

3.0

2.3

2.4

2.2

 

1β 010

64.9

50.8

5.0

2.2

2.4

2.4

2.2

  1. Percentage of reads mapped (five edits or fewer), and mapped with a given number of errors, for one million simulated reads using the codes with probe generators as specified. For comparison, figures are also given using only the two-base-encoding probe set (probe generator ‘None’). Since color-space reads have their first position trimmed before mapping to produce reads 49 colors long, the percentages of mapped reads and reads with a given number of errors are slightly inflated compared to those given for base-space reads.