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Table 1 List with the notation used in Algorithm 1

From: Arrow plot: a new graphical tool for selecting up and down regulated genes and genes differentially expressed on sample subgroups

Symbol

Definition

GA, GB

Kernel density coordinates of samples A and B

A, B

pairs of coordinates of samples A and B that will be used

 

to estimate OVL

G x A [i], G y A [i]

index a pair of coordinates of GA,

 

where G x A [i] is the abscissa and

 

G y A [i] is the correspondent ordinate (same to GB and G)

♯(.)

total number of pairs of coordinates

G

ordered list of points resulting from the union of A and B

P

union of G with new pairs of coordinates,

 

which correspond to jump points between densities

G[i]

indexes a pair of coordinates of G

x new

new abscissa

y new

new ordinate

F

final list of pairs of coordinates to estimate OVL

OVL

overlapping coefficient between two kernel densities

  1. Symbols are listed in order of appearance in the Algorithm.