From: Surprising results on phylogenetic tree building methods based on molecular sequences
Description | Methods |
---|---|
Multiple sequence | ClustalO, ClustalW, Mafft, PartialOrder, |
alignment | Â |
 | Poa, Prank, Probabilistic, Probcons, |
 | Prograph |
Methods on MSAs | Gap, Parsimony, PhyML, RAxML, RAxMLG |
Pairwise alignments | GlobalCodonPAM, GlobalJTT, GlobalLG, |
 | GlobalSynPAM, GlobalWAG, GlobalGCB, |
 | LocalCodonPAM, LocalJTT, LocalLG, |
 | LocalSynPAM, LocalWAG, LocalGCB, |
 | LogDelGlobal, LogDelLocal |
Pairwise alignments | CodonDist, InducDist |
from MSAs | Â |
Distance methods | BioME, BioNJ, FastME, LST, NJ |