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Table 1 Details of DoBi on the training set

From: Protein-protein binding site identification by enumerating the configurations

Complex F r a F l b Complex F r F l Complex F r F l Complex F r F l
1a2x(A:B) 45.8 73.7 1jtd(A:B) 59.5 51.2 1r1k(A:D) 24.5 12.0 1z3g(H:A) 77.4 85.7
1a2y(A:C) 77.8 60.9 1jtp(A:L) 62.9 70.0 1rzr(C:T) 60.5 70.3 1z5s(A:B) 52.2 66.7
1aip(A:C) 64.4 59.1 1jwm(A:D) 61.5 58.8 1s3s(F:G) 61.0 66.7 1z92(A:B) 27.0 46.2
1ava(A:C) 74.2 60.3 1k93(A:D) 37.6 33.7 1sgp(E:I) 53.7 58.3 1zlh(A:B) 62.5 64.0
1bnd(A:B) 53.1 57.1 1kkm(A:I) 51.9 58.5 1shw(B:A) 72.7 76.9 1zm2(A:B) 46.9 52.5
1bzq(A:L) 64.9 75.0 1kps(A:B) 68.8 62.5 1sq0(B:A) 50.0 57.1 2a19(B:A) 76.9 72.2
1c9p(A:B) 61.8 54.5 1ktk(E:A) 30.8 61.5 1sq2(L:N) 73.7 78.8 2a41(A:C) 76.4 90.2
1cgj(E:I) 65.3 63.4 1ku6(A:B) 63.0 83.3 1ta3(B:A) 34.6 53.7 2a42(A:B) 79.1 70.2
1cxz(A:B) 54.5 60.0 1l4d(A:B) 81.0 66.7 1te1(A:B) 78.3 83.6 2a5d(B:A) 73.3 84.4
1d4x(A:G) 59.6 72.7 1m27(A:C) 76.2 78.3 1tk5(A:B) 65.6 47.2 2auh(A:B) 60.0 77.3
1df9(A:C) 45.0 58.3 1ma9(A:B) 12.9 60.3 1tu3(A:F) 82.8 76.9 2b12(A:B) 71.0 57.1
1dhk(A:B) 10.8 57.6 1mbx(A:C) 48.9 64.7 1u0n(A:D) 18.2 19.5 2b3t(B:A) 68.9 59.5
1dkf(B:A) 47.8 68.2 1mr1(A:D) 83.7 77.4 1u0s(Y:A) 89.5 90.9 2b5i(B:A) 78.8 62.5
1dp5(A:B) 74.2 86.8 1mzw(A:B) 55.2 72.7 1u7e(A:B) 26.9 62.5 2bh1(A:X) 60.9 57.9
1eai(B:D) 52.2 70.6 1nby(A:C) 50.0 58.3 1uex(A:C) 27.3 50.0 2bkh(A:B) 74.3 67.9
1efu(C:D) 57.1 70.3 1ncb(L:N) 48.6 30.8 1ujw(A:B) 36.1 82.8 2bkk(A:B) 74.3 52.6
1f5q(A:B) 58.2 63.0 1nmu(A:B) 43.9 51.6 1ul1(X:A) 52.6 51.4 2bnq(D:A) 51.9 34.5
1f6a(B:A) 28.6 47.6 1npe(A:B) 43.1 68.1 1uuz(A:D) 58.8 57.9 2c1m(A:B) 40.4 66.7
1f7z(A:I) 72.7 89.7 1nu9(A:C) 56.7 56.8 1uzx(A:B) 71.0 68.7 2c5d(A:C) 54.2 69.4
1ffg(A:B) 73.3 62.1 1oiu(A:B) 70.8 76.2 1v5i(A:B) 3.8 87.2 2gy7(B:A) 63.2 73.2
1fm9(D:A) 82.6 89.4 1omw(A:B) 75.8 63.4 1v7p(A:C) 50.0 41.4 2hdi(A:B) 9.1 57.1
1fns(L:A) 50.0 28.6 1p3q(R:V) 66.7 80.0 1w98(A:B) 50.7 62.3 2iw5(A:B) 66.1 72.5
1g20(A:E) 45.8 40.8 1p7q(A:D) 63.6 61.5 1wpx(A:B) 58.3 55.2 2j0m(A:B) 81.3 64.3
1g9m(G:L) 38.1 28.6 1p9m(C:B) 85.7 70.6 1wr6(A:E) 89.7 93.3 2jb0(B:A) 66.7 63.2
1h0d(A:C) 16.7 30.0 1pkq(A:E) 27.3 9.1 1wrd(A:B) 56.2 69.2 2omz(A:B) 60.2 71.0
1h59(A:B) 91.7 81.5 1ppf(E:I) 85.1 83.9 1x86(A:B) 52.6 60.4 2p8w(T:S) 56.6 90.3
1i8l(A:C) 83.9 71.4 1qav(B:A) 81.3 78.0 1xdt(T:R) 48.4 90.2 2pav(A:P) 72.0 73.1
1iar(B:A) 76.5 51.6 1qbk(B:C) 41.9 38.6 1xx9(C:A) 54.5 40.0 3bp5(B:A) 70.0 72.0
1jl4(A:D) 40.0 44.4 1qo0(B:A) 31.6 33.3 1yi5(A:F) 83.9 76.5 3ygs(C:P) 64.5 58.1
  1. aF r (%) is the F-score of our method on the receptor proteins.
  2. bF l (%) is the F-score of our method on the ligand proteins.