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Table 10 Detailed Results for DoBi on the data set used by core-SVM

From: Protein-protein binding site identification by enumerating the configurations

Protein ID Partner ID Int n a C n b P n c Accd Cove
1a9xA 1a9xB 59 52 95 54.7 88.1
1a9xB 1a9xA 52 47 88 53.4 90.4
1aym1 1aym3 46 38 41 92.7 82.6
1aym2 1aym1 57 54 70 77.1 94.7
1aym3 1aym1 43 33 36 91.7 76.7
1blxA 1blxB 21 15 33 45.5 71.4
1fzcB 1fzcC 45 38 58 65.5 84.4
1g4yR 1g4yB 29 5 18 27.8 17.2
1gk8A 1gk8I 49 28 55 50.9 57.1
1h1rB 1h1rA 33 9 14 64.3 27.2
1h8eC 1h8eD 69 37 67 55.2 53.6
1h8eD 1h8eC 35 19 39 48.7 54.3
1hxs4 1gxs1 31 21 35 60.0 67.7
1irdB 1irdA 23 20 32 62.5 86.9
1j34A 1j34B 43 19 22 86.4 44.1
1jboB 1jboA 36 16 29 55.2 44.4
1jsdA 1jsdB 51 18 20 90.0 35.3
1jsdB 1jsdA 67 26 42 61.9 38.8
1k5nA 1k5nB 35 24 56 42.9 68.6
1k5nB 1k5nA 25 16 39 41.0 64.0
1ld8A 1ld8B 35 23 28 82.1 65.7
1mtyB 1mtyD 58 22 34 64.7 38.1
1mtyD 1mtyB 31 10 15 66.7 32.2
1mtyG 1mtyD 41 18 42 42.9 43.9
1n4qB 1n4qA 25 5 15 33.3 20.0
1p2jA 1p2jI 23 18 36 50.0 78.2
1p2jI 1p2jA 14 13 21 61.9 92.9
1qopA 1qopB 35 32 52 61.5 91.4
1qopB 1qopA 34 31 51 60.8 91.2
1rthA 1rthB 57 32 68 47.0 56.1
1rthB 1rthA 58 33 69 47.8 56.9
1rypB 1rypA 31 13 24 54.1 41.9
1rzhH 1rzhM 37 8 16 50.0 21.6
1rzhL 1rzhM 48 42 45 93.3 87.5
1rzhM 1rzhL 51 45 48 93.8 88.2
1s5dD 1s5dA 4 4 29 13.7 100
1tugA 1tugB 17 14 39 35.9 82.4
1tugB 1tugA 12 9 24 37.5 75.0
1tx4B 1tx4A 25 18 34 52.9 72.0
1uvqA 1uvqB 61 35 39 89.7 57.4
1uvqB 1uvqA 55 26 31 83.9 47.2
1we3F 1we3T 12 10 48 20.8 83.3
1wf4o 1wf4a 10 10 19 52.6 100
2ltnA 2ltnB 55 12 16 75.0 21.8
2ltnB 2ltnA 47 17 17 100 36.2
3pcgA 3pcgM 41 12 15 80.0 29.3
3pcgM 3pcgA 40 11 21 52.4 27.5
4ubpA 4ubpC 24 8 43 18.6 33.3
4ubpC 4ubpB 46 26 86 30.2 56.5
8rucI 8rucA 38 29 38 76.3 76.3
  1. aInt n is the number of residues on actual interface in complex.
  2. bC n is the number of residues correctly predicted to be on interface by our method.
  3. cP n is the number of total residues predicted to be on interface by our method.
  4. dAcc (%) is the accuracy of our method on the data set.
  5. eCov (%) is the coverage of our method on the data set.