Table 15 Comparison of Atomic Contact Energy for the Predicted Complexes and the Experimental Structures on Benchmark v4.0
From: Protein-protein binding site identification by enumerating the configurations
PDB | E act a | E pre b | F r c | F l d | PDB | E act | E pre | F r | F l | PDB | E act | E pre | F r | F l | PDB | E act | E pre | F r | F l |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2o8v(A:B) | -96.7 | -149.3 | 91.4 | 81.0 | 1a2k(C:B) | -38.9 | -314.8 | 72.7 | 71.8 | 2vis(B:C) | 35.8 | -389.7 | 62.8 | 61.1 | 1n2c(A:F) | 97.6 | -272.1 | 46.1 | 60.0 |
1hcf(A:X) | -46.2 | -13.4 | 90.9 | 83.7 | 4cpa(A:I) | -47.6 | -318.3 | 72.7 | 71.0 | 1acb(E:I) | -157.4 | -555.7 | 62.2 | 92.9 | 1xu1(A:T) | 60.7 | 85.9 | 45.5 | 72.7 |
1z5y(D:E) | -85.9 | -51.1 | 89.7 | 90.0 | 1wq1(R:G) | 161.0 | 306.0 | 72.4 | 77.3 | 1j2j(A:B) | -49.1 | -161.8 | 62.1 | 51.6 | 1gpw(A:B) | 107.8 | -144.5 | 45.0 | 75.7 |
1gcq(B:C) | -5.3 | 4.4 | 88.9 | 94.1 | 1mah(A:F) | -8.5 | -303.0 | 72.4 | 64.3 | 1jzd(A:C) | 55.2 | 78.5 | 61.6 | 57.1 | 1oyv(B:I) | -70.5 | -136.0 | 44.5 | 60.6 |
2j0t(A:D) | -65.8 | -74.5 | 88.9 | 93.3 | 1udi(E:I) | 69.2 | -93.0 | 72.0 | 50.0 | 2hmi(D:B) | -7.1 | -524.8 | 61.6 | 57.2 | 1d6r(A:I) | 88.0 | -66.6 | 43.4 | 66.7 |
1s1q(A:B) | 20.4 | 168.1 | 88.2 | 90.9 | 1t6b(X:Y) | 87.4 | -675.9 | 71.9 | 54.2 | 1vfb(B:C) | 81.7 | 191.4 | 61.5 | 59.3 | 2fju(B:A) | 61.0 | -658.9 | 43.1 | 27.9 |
2ayo(A:B) | 340.9 | 384.2 | 86.8 | 96.3 | 2g77(A:B) | 215.5 | 72.6 | 71.6 | 76.3 | 1b6c(A:B) | -29.8 | -130.3 | 61.1 | 47.6 | 2sic(E:I) | -158.8 | -321.2 | 42.9 | 74.1 |
1n8o(C:E) | -91.8 | -64.1 | 86.5 | 83.9 | 1wdw(B:A) | 301.6 | 30.6 | 71.4 | 64.8 | 1oph(A:B) | -10.1 | -516.1 | 60.6 | 64.5 | 1eer(A:B) | 143.2 | 219.2 | 42.1 | 71.4 |
1i4d(D:A) | 30.0 | -49.1 | 86.5 | 82.1 | 1jk9(B:A) | 1.7 | -150.6 | 71.4 | 69.9 | 1f51(A:E) | 179.1 | 37.4 | 60.0 | 47.4 | 1ofu(X:A) | -32.7 | -193.5 | 41.8 | 62.9 |
1qa9(A:B) | 260.0 | -73.9 | 85.7 | 83.3 | 1gp2(A:B) | 56.5 | -48.6 | 71.4 | 72.7 | 2i25(N:L) | 131.0 | 144.8 | 60.0 | 76.6 | 2abz(B:E) | 34.0 | -300.7 | 41.0 | 70.3 |
2hle(A:B) | 83.0 | 179.3 | 85.3 | 95.2 | 1dqj(B:C) | 119.4 | 104.1 | 71.4 | 71.4 | 1ktz(A:B) | -24.0 | -150.3 | 60.0 | 57.2 | 1fq1(A:B) | 152.5 | -187.8 | 40.8 | 30.8 |
1fle(E:I) | -134.1 | -248.0 | 84.6 | 96.5 | 1us7(A:B) | 71.6 | 30.8 | 71.0 | 64.5 | 1i9r(H:A) | 92.9 | 284.5 | 60.0 | 58.8 | 1jps(H:T) | 258.6 | 366.2 | 37.8 | 66.7 |
1jtg(B:A) | 232.8 | 257.6 | 84.4 | 86.1 | 1kkl(A:H) | 105.2 | -252.2 | 71.0 | 75.0 | 1sbb(A:B) | 0.5 | 154.1 | 60.0 | 58.8 | 1xqs(A:C) | 368.9 | 383.0 | 37.2 | 23.3 |
1hia(B:I) | -4.8 | 51.3 | 83.7 | 56.0 | 3d5s(A:C) | 89.8 | -70.8 | 70.8 | 68.3 | 1ffw(A:B) | 79.2 | 68.9 | 59.2 | 62.1 | 1zm4(A:B) | 118.6 | -236.7 | 35.8 | 33.3 |
1k5d(A:C) | 197.6 | 305.1 | 81.5 | 79.5 | 1r6q(A:C) | -71.5 | -129.3 | 70.4 | 64.9 | 2i9b(E:A) | 58.0 | -87.2 | 59.0 | 76.5 | 1ijk(C:A) | 85.1 | -45.5 | 35.7 | 14.8 |
1yvb(A:I) | -141.9 | -271.2 | 80.8 | 72.2 | 1he1(C:A) | 20.6 | 242.2 | 70.3 | 66.6 | 1pxv(A:C) | 28.5 | -79.4 | 58.8 | 76.2 | 1tmq(A:B) | 2.1 | -466.6 | 35.1 | 63.0 |
1fak(L:T) | 108.7 | 217.2 | 80.0 | 75.6 | 1rv6(V:X) | -17.7 | -3.7 | 70.0 | 52.6 | 1r0r(E:I) | -126.0 | -127.4 | 58.8 | 61.5 | 2ido(A:B) | -71.8 | 92.8 | 33.4 | 39.0 |
3sgq(E:I) | -57.9 | 26.3 | 80.0 | 75.0 | 1bkd(R:S) | 195.0 | -49.0 | 69.6 | 78.6 | 1e6j(H:P) | 14.9 | -366.7 | 58.8 | 40.0 | 1oc0(A:B) | 27.1 | -417.1 | 33.3 | 66.7 |
1pvh(A:B) | 121.5 | 13.5 | 80.0 | 62.9 | 1avx(A:B) | 31.8 | 35.1 | 69.2 | 81.5 | 1jmo(A:H) | -49.0 | -492.6 | 57.9 | 32.5 | 1y64(A:B) | 123.8 | -239.0 | 32.3 | 36.0 |
2oob(A:B) | -15.8 | -28.9 | 80.0 | 78.3 | 1zhi(A:B) | 93.8 | -89.3 | 68.7 | 64.5 | 3cph(G:A) | 84.4 | -193.3 | 57.7 | 68.3 | 1dfj(E:I) | 159.3 | -394.3 | 32.1 | 44.4 |
1oyv(A:I) | -152.8 | -158.1 | 79.3 | 66.7 | 1kac(A:B) | 92.6 | 66.9 | 68.6 | 57.9 | 1ewy(A:C) | 55.6 | -80.1 | 57.2 | 63.1 | 1m10(A:B) | 168.3 | -36.2 | 31.8 | 54.1 |
1i2m(A:B) | 300.9 | 213.4 | 79.2 | 79.4 | 1gl1(A:I) | -83.2 | -282.7 | 68.1 | 78.8 | 2h7v(A:C) | 67.5 | 9.9 | 57.2 | 73.2 | 1ira(Y:X) | 212.7 | 48.1 | 31.8 | 25.0 |
1atn(A:D) | -72.3 | -365.5 | 79.1 | 73.3 | 1e6e(A:B) | 246.8 | -137.5 | 67.7 | 73.4 | 1qfw(M:B) | 60.9 | 61.7 | 57.2 | 48.0 | 2oul(A:B) | -123.9 | -311.2 | 30.4 | 54.0 |
1klu(A:D) | 60.2 | -243.4 | 79.0 | 54.5 | 1bj1(H:W) | 10.9 | -139.6 | 66.7 | 71.0 | 2z0e(A:B) | -38.7 | -562.7 | 56.4 | 63.8 | 1k74(A:D) | 127.4 | 145.5 | 30.0 | 27.3 |
2hrk(A:B) | -5.4 | -52.5 | 78.9 | 86.4 | 1k4c(A:C) | 70.3 | -216.1 | 66.7 | 52.2 | 2vdb(A:B) | 77.4 | -562.9 | 56.3 | 58.3 | 1ghq(A:B) | -0.5 | -175.5 | 30.0 | 42.1 |
1efn(B:A) | 30.0 | 173.4 | 78.8 | 89.7 | 1fc2(C:D) | 23.1 | -93.1 | 66.7 | 70.6 | 1f6m(A:C) | 14.6 | -307.7 | 56.0 | 63.8 | 3bp8(A:C) | 57.9 | -429.9 | 30.0 | 53.0 |
1buh(A:B) | 70.5 | 151.9 | 78.8 | 71.1 | 2jel(H:P) | 74.0 | 18.2 | 66.7 | 75.9 | 1e4k(A:C) | -41.5 | -385.7 | 55.1 | 48.0 | 1azs(A:C) | -65.7 | -331.5 | 28.6 | 51.4 |
2sni(E:I) | -125.0 | -1.9 | 78.8 | 87.5 | 1zhh(A:B) | -84.0 | -537.9 | 66.7 | 64.3 | 1zli(A:B) | -100.2 | -164.6 | 54.1 | 52.4 | 1he8(B:A) | 64.0 | -323.3 | 27.4 | 40.0 |
1mlc(B:E) | 74.4 | -133.7 | 78.8 | 62.0 | 1gla(G:F) | -26.3 | -232.4 | 66.7 | 65.4 | 1kxp(A:D) | 189.4 | -311.2 | 54.0 | 54.8 | 2fd6(H:U) | 78.6 | -317.1 | 27.3 | 31.6 |
1qfw(H:A) | 36.5 | 150.4 | 78.6 | 45.4 | 1ml0(A:D) | -95.8 | -641.1 | 66.7 | 60.4 | 1clv(A:I) | 0.3 | -648.0 | 54.0 | 79.1 | 1fqj(A:B) | 234.8 | 326.9 | 26.4 | 25.9 |
1xd3(A:B) | -5.2 | -240.3 | 78.0 | 63.4 | 1z0k(A:B) | 9.7 | -84.1 | 66.6 | 80.0 | 1de4(A:C) | 123.1 | -535.6 | 54.0 | 49.3 | 1syx(A:B) | 116.4 | 113.1 | 26.3 | 66.7 |
2mta(L:A) | -55.7 | 70.5 | 77.4 | 80.0 | 2nz8(A:B) | 52.1 | 36.3 | 66.6 | 77.1 | 1jiw(P:I) | 110.3 | -628.9 | 53.9 | 66.7 | 2b42(A:B) | 103.6 | -199.4 | 24.0 | 23.6 |
1nw9(B:A) | -120.1 | -333.9 | 77.3 | 80.0 | 1e96(A:B) | 110.7 | -120.4 | 66.6 | 60.6 | 2b4j(A:C) | 94.0 | -120.6 | 53.8 | 66.7 | 1eaw(A:B) | 12.0 | -173.1 | 23.2 | 74.3 |
2c0l(A:B) | 130.2 | -225.3 | 76.7 | 78.1 | 2oor(A:C) | -50.4 | -839.7 | 66.6 | 41.0 | 1ezu(C:B) | -103.2 | -172.2 | 53.1 | 66.7 | 2pcc(A:B) | 47.3 | 98.9 | 22.2 | 30.3 |
1iqd(A:C) | -14.3 | -261.7 | 76.5 | 52.2 | 2ajf(A:E) | 59.4 | -194.7 | 64.8 | 57.1 | 1rlb(B:E) | -69.1 | -322.3 | 52.7 | 63.2 | 1gxd(A:C) | 45.2 | -680.4 | 21.9 | 72.1 |
1nsn(L:S) | 73.6 | 122.8 | 76.2 | 38.7 | 1ahw(B:C) | 262.7 | 388.1 | 64.7 | 80.0 | 1ibr(A:B) | 234.0 | -850.1 | 51.3 | 38.5 | 2j7p(A:D) | 208.9 | 122.5 | 21.7 | 30.2 |
1nca(H:N) | 146.6 | 78.6 | 75.9 | 66.6 | 1lfd(B:A) | 85.3 | -28.0 | 64.5 | 85.7 | 2ot3(B:A) | -165.8 | -494.1 | 51.1 | 52.4 | 1h1v(A:G) | 115.0 | -60.2 | 20.4 | 38.9 |
2z9k(A:B) | 67.0 | -89.9 | 75.6 | 83.3 | 1ay7(A:B) | 123.2 | -30.3 | 64.5 | 77.4 | 1cgi(E:I) | -186.4 | -383.8 | 51.0 | 80.0 | 2oza(B:A) | 287.3 | -5.2 | 20.2 | 39.1 |
1grn(A:B) | 189.3 | -80.6 | 75.6 | 66.7 | 2btf(A:P) | 165.6 | 102.3 | 64.0 | 50.0 | 1akj(A:D) | 108.3 | 11.1 | 51.0 | 61.6 | 1kxq(H:A) | 63.7 | -497.6 | 19.7 | 28.1 |
1bgx(L:T) | 127.3 | -727.9 | 75.3 | 59.5 | 1bvk(E:F) | 76.8 | 150.6 | 64.0 | 46.1 | 1f34(A:B) | -70.5 | -376.9 | 49.3 | 66.6 | 1jwh(C:A) | -27.8 | -305.7 | 18.7 | 35.3 |
1ppe(E:I) | -54.5 | -6.3 | 75.0 | 72.8 | 1h9d(A:B) | 12.9 | 167.7 | 63.6 | 72.4 | 1fsk(C:A) | 60.7 | -19.8 | 48.3 | 45.2 | 1bvn(P:T) | -43.9 | -785.8 | 18.5 | 65.1 |
2cfh(A:C) | -162.0 | -435.9 | 74.4 | 73.9 | 7cei(A:B) | 216.5 | 192.5 | 63.2 | 68.8 | 1ak4(A:D) | -48.6 | 60.8 | 47.1 | 56.0 | 2o3b(A:B) | 119.0 | -17.4 | 14.3 | 28.6 |
1fcc(A:C) | 247.3 | 160.9 | 74.1 | 66.7 | 1wej(L:F) | 117.5 | 48.0 | 63.2 | 50.0 | 1mq8(A:B) | 40.7 | -56.3 | 46.7 | 84.9 | 1r8s(A:E) | 38.2 | 90.0 | 12.6 | 57.7 |
2uuy(A:B) | -10.2 | -127.7 | 73.5 | 86.9 | 1ib1(A:E) | 163.1 | 240.4 | 62.8 | 63.4 | 2a5t(A:B) | 107.0 | -227.5 | 46.5 | 48.9 | 2hqs(A:H) | 190.9 | -202.6 | 10.5 | 22.6 |