Table 3 Detailed Results of DoBi and Fernández-Recio et al. ’s method
From: Protein-protein binding site identification by enumerating the configurations
Receptor | Ligand | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Complex | DoBi | Fernández-Recioe | DoBi | Fernández-Recioe | ||||||||
PDBa | Int n b | Acc c | Cov d | Acc | Cov | PDB | Int n | Acc | Cov | Acc | Cov | |
1ca0(B:D) | 5cha | 24 | 46.2 | 50.0 | 50.6 | 81.0 | 1aap | 14 | 26.1 | 42.9 | 35.6 | 57.0 |
1cbw(B:D) | 5cha | 26 | 58.6 | 65.4 | 65.7 | 92.0 | 1bpi | 14 | 77.8 | 100 | 33.7 | 64.0 |
1acb(E:I) | 5cha | 24 | 14.5 | 66.7 | 55.0 | 77.0 | 1egl | 13 | 20.4 | 84.6 | 21.6 | 41.0 |
1cho(F:I) | 5cha | 25 | 36.9 | 96.0 | 63.6 | 89.0 | 1omu | 13 | 35.3 | 92.3 | 48.1 | 77.0 |
1cgi(E:I) | 1chg | 24 | 26.3 | 45.5 | 70.8 | 92.0 | 1hpt | 19 | 48.5 | 84.2 | 58.3 | 70.0 |
2kai(A:I) | 2pka | 33 | 53.8 | 58.3 | 41.5 | 54.0 | 1bpi | 19 | 68.8 | 84.6 | 35.9 | 79.0 |
2sni(E:I) | 2st1 | 28 | 61.1 | 78.6 | 35.8 | 93.0 | 2ci2 | 15 | 70.6 | 80.0 | 37.9 | 53.0 |
2sic(E:I) | 2st1 | 30 | 73.5 | 83.3 | 29.6 | 83.0 | 3ssi | 12 | 62.5 | 83.3 | 18.4 | 46.0 |
1cse(E:I) | 1sbc | 30 | 42.6 | 96.7 | 33.1 | 96.0 | 1egl | 12 | 26.3 | 83.3 | 22.8 | 41.0 |
2tec(E:I) | 1thm | 28 | 38.0 | 67.9 | 34.2 | 82.0 | 1egl | 13 | 31.0 | 69.2 | 30.0 | 45.0 |
1taw(A:B) | 5ptp | 26 | 42.1 | 30.8 | 51.9 | 83.0 | 1aap | 13 | 47.1 | 61.5 | 34.4 | 62.0 |
2ptc(E:I) | 5ptp | 24 | 33.3 | 50.0 | 52.4 | 89.0 | 1bpi | 14 | 56.5 | 92.9 | 18.0 | 36.0 |
3tgi(E:I) | 1ane | 25 | 51.9 | 56.0 | 16.1 | 29.0 | 1bpi | 14 | 58.8 | 71.4 | 30.5 | 64.0 |
1brc(E:I) | 1bra | 24 | 30.0 | 25.0 | 44.4 | 80.0 | 1aap | 11 | 62.5 | 90.9 | 36.5 | 62.0 |
1fss(A:B) | 2ace | 25 | 32.7 | 64.0 | 23.8 | 100 | 1fsc | 19 | 65.4 | 89.5 | 69.2 | 83.0 |
1bvn(P:T) | 1pif | 31 | 29.2 | 22.6 | 45.0 | 90.0 | 2ait | 20 | 42.1 | 80.0 | 61.4 | 86.0 |
1bgs(B:F) | 1a2p | 18 | 23.1 | 66.7 | 73.1 | 95.0 | 1a19 | 16 | 34.1 | 93.8 | 72.3 | 94.0 |
1ay7(A:B) | 1rge | 15 | 81.3 | 86.7 | 71.4 | 100 | 1a19 | 15 | 84.6 | 73.3 | 52.2 | 94.0 |
1ugh(E:I) | 1akz | 24 | 63.6 | 87.5 | 44.1 | 97.0 | 2ugi | 25 | 57.1 | 64.0 | 83.3 | 75.0 |
2pcb(A:B) | 1ccp | 10 | 23.5 | 40.0 | 24.2 | 92.0 | 1hrc | 9 | 22.2 | 44.4 | 29.2 | 73.0 |
2pcf(B:A) | 1ctm | 21 | 57.7 | 71.4 | 57.5 | 92.0 | 1ag6 | 24 | 56.7 | 70.8 | 66.4 | 73.0 |
1mlc(B:E) | 1mlb | 14 | 65.0 | 92.9 | 31.3 | 100 | 1lza | 10 | 43.5 | 100 | 9.1 | 29.0 |
1vfb(A:C) | 1vfa | 8 | 44.4 | 100 | 52.6 | 100 | 1lza | 8 | 43.8 | 87.5 | 26.8 | 83.0 |
1ewy(A:C) | 1que | 15 | 20.8 | 26.3 | 52.6 | 100 | 1fxa | 15 | 37.5 | 52.9 | 56.7 | 68.0 |
1eer(B:A) | 1ern | 23 | 13.8 | 65.2 | 35.0 | 91.0 | 1buy | 22 | 21.9 | 95.5 | 53.6 | 75.0 |
1kkl(A:H) | 1jb1 | 13 | 31.3 | 76.9 | 3.5 | 11.0 | 1sph | 12 | 32.4 | 100 | 67.5 | 81.0 |
1ken(A:C) | 2viu | 56 | 92.6 | 44.6 | 30.3 | 97.0 | 1ken | 64 | 71.7 | 51.6 | 29.4 | 100 |
1kxv(A:C) | 1pif | 19 | 15.0 | 63.2 | 3.7 | 10.0 | 1kxv | 21 | 27.0 | 81.0 | 43.7 | 83.0 |
1kxt(A:B) | 1pif | 17 | 17.9 | 41.2 | 14.1 | 55.0 | 1kxt | 20 | 30.8 | 40.0 | 53.3 | 96.0 |
1kxq(A:H) | 1pif | 30 | 42.5 | 56.7 | 52.6 | 100 | 1kxq | 25 | 54.5 | 72.0 | 56.5 | 96.0 |
1l0x(A:B) | 1bec | 19 | 42.9 | 40.0 | 0 | 0 | 1b1z | 17 | 27.8 | 41.7 | 16.1 | 100 |
1avw(A:B) | 2ptn | 31 | 31.3 | 48.4 | 58.8 | 100 | 1ba7 | 15 | 44.1 | 100 | 36.2 | 94.0 |
1dfj(I:E) | 2bnh | 33 | 52.9 | 54.5 | 49.4 | 89.0 | 7rsa | 29 | 47.1 | 55.2 | 66.7 | 80.0 |
1tgs(Z:I) | 2ptn | 30 | 30.4 | 70.0 | 62.0 | 93.0 | 1hpt | 18 | 43.8 | 77.8 | 68.3 | 82.0 |
1ahw(A:B) | 1fgn | 43 | 23.0 | 39.5 | 15.6 | 89.0 | 1boy | 45 | 28.3 | 62.2 | 0 | 0 |
1dqj(A:C) | 1dqq | 11 | 50.0 | 81.8 | 20.0 | 100 | 3lzt | 11 | 50.0 | 81.8 | 14.4 | 39.0 |
1wej(H:F) | 1qbl | 7 | 38.9 | 100 | 24.4 | 100 | 1hrc | 8 | 40.0 | 100 | 18.3 | 44.0 |
1avz(B:C) | 1avv | 16 | 58.8 | 62.5 | 16.2 | 42.0 | 1shf | 13 | 42.3 | 84.6 | 54.1 | 92.0 |
1wq1(G:R) | 1wer | 33 | 70.6 | 72.7 | 11.4 | 33.0 | 5p21 | 26 | 77.8 | 80.8 | 40.8 | 53.0 |
2mta(L:A) | 2bbk | 13 | 57.9 | 84.6 | 30.0 | 93.0 | 1aan | 11 | 64.7 | 100 | 58.8 | 100 |
1bth(H:P) | 2hnt | 30 | 15.2 | 16.7 | 27.7 | 61.0 | 6pti | 17 | 94.1 | 94.1 | 32.5 | 39.0 |
1fin(A:B) | 1hcl | 46 | 35.5 | 47.8 | 28.3 | 68.0 | 1vin | 35 | 32.8 | 60.0 | 66.7 | 100 |
1fq1(B:A) | 1b39 | 16 | 63.2 | 75.0 | 8.2 | 32.0 | 1fpz | 16 | 63.2 | 75.0 | 0 | 0 |