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Table 4 Comparisons of DoBi, metaPPI, meta-PPISP and PPI-Pred

From: Protein-protein binding site identification by enumerating the configurations

  DoBi metaPPI meta-PPISP PPI-Pred
Type Suca Accb Covc Fg M e V f Suc Acc Cov F M V Suc Acc Cov F M V Suc Acc Cov F M V
E-Id 67.6 56.7 61.9 0.59 23.0 7.6 70.5 61.1 36.5 0.45 12.9 10.4 55.8 56.4 54.7 0.55 24.1 13.5 47.1 39.5 37.9 0.38 23.7 15.1
others 47.9 46.4 63.3 0.53 29.5 19.8 43.8 40.7 22.2 0.28 8.0 10.1 35.6 38.5 25.7 0.30 11.8 12.6 22.9 29.3 31.3 0.30 19.0 14.7
CAPRI 50.0 48.9 55.8 0.52 25.7 12.3 50.0 46.7 24.3 0.32 15.7 12.8 26.0 27.9 30.8 0.29 19.6 13.8 28.6 25.7 29.5 0.27 28.2 19.2
Overall 53.7 50.0 60.0 0.55 26.4 13.8 52.9 48.2 26.6 0.35 12.3 11.2 36.8 38.8 35.0 0.43 18.0 13.3 31.2 30.4 32.2 0.32 23.8 16.6
  1. aSuc (%) is the success rate of the corresponding method on the data set.
  2. bAcc (%) is the average accuracy of the corresponding method on the data set.
  3. cCov (%) is the average coverage of the corresponding method on the data set.
  4. dE-I is the type of enzyme-inhibitor.
  5. eM is the average of the sizes predicted by the corresponding method on the data set.
  6. fV is the standard deviation of the sizes predicted by the corresponding method on the data set.
  7. gF is the F-score of the corresponding method on the data set.