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Table 6 Detailed Results of DoBi, metaPPI, meta-PPISP and PPI-Pred on 27 targets

From: Protein-protein binding site identification by enumerating the configurations

 

Protein 1

Protein 2

Complex

 

DoBi

metaPPId

meta-PPISPd

PPI-Predd

 

DoBi

metaPPId

meta-PPISP

PPI-Pred

 

Int n a

Acc b

Cov c

Acc

Cov

Acc

Cov

Acc

Cov

Int n

Acc

Cov

Acc

Cov

Acc

Cov

Acc

Cov

T01

11

46.2

54.5

83.3

62.5

13

38.9

53.8

0

0

T02

7

24.1

100

72.2

43.3

6

21.4

100

0

0

T03

10

12.0

30.0

60.0

75.0

15

32.0

53.3

19.6

18.0

T04

19

50.0

89.5

0

0

58.3

38.9

2.4

3.6

18

37.5

100

64.3

40.9

0

0

71.4

68.2

T05

20

29.2

35.0

0

0

52.6

33.3

4.8

9.1

17

14.3

35.3

90.0

39.1

4.5

7.7

38.9

30.4

T06

23

28.6

34.8

71.4

29.4

39.1

27.3

59.5

73.5

29

38.1

27.6

28.6

15.4

25.8

66.7

4.5

3.8

T07

15

52.9

60.0

33.3

30.8

33.3

30.8

0

0

11

15.4

18.2

7.7

5.6

5.6

4.3

0

0

T08

25

37.9

44.0

0

0

9.5

8.3

0

0

23

64.0

69.6

30.0

11.5

0

0

7.9

11.5

T09

37

90.5

51.4

80.0

20.0

0

0

25.8

20.0

37

76.7

62.2

45.5

12.5

0

0

16.1

12.5

T10

46

40.0

47.8

10.0

47.4

53

50.0

49.1

0

0

T11

12

50.0

91.7

86.7

59.1

45.8

50.0

28

71.9

82.1

81.8

50.0

56.5

72.2

T12

12

16.7

25.0

93.8

62.5

61.5

30.8

45.5

41.7

28

86.4

67.9

55.6

33.3

36.0

45.0

22.2

13.3

T13

10

33.3

100

0

0

8

44.4

100

72.0

85.7

T14

53

52.2

22.6

10.0

2.3

6.8

33.3

8.6

7.0

63

42.3

17.5

50.0

13.2

13.5

19.2

2.0

2.6

T15

23

95.0

82.6

0

0

63.2

50.0

5.0

11.1

19

81.0

89.5

15.8

33.3

56.5

72.2

9.1

11.1

T16

55.6

21.7

87.0

74.1

0

0

100

29.0

25.0

53.8

61.8

67.7

T17

0

0

23.1

12.5

0

0

92.9

65.0

0

0

33.3

45.0

T18

24

53.6

62.5

85.7

50.0

42.9

36.0

46.2

50.0

31

50.0

35.5

0

0

52.2

36.4

2.1

3.4

T19

12

68.8

91.7

33.3

28.0

12

45.0

75.0

69.2

62.1

T20

47

53.6

31.9

94.4

37.8

23.8

90.9

28.6

22.2

35

72.2

37.1

72.2

36.1

34.3

54.5

23.2

63.9

T21

17

73.7

82.4

0

0

0

0

3.0

6.7

15

55.6

66.7

0

0

33.3

20.8

0

0

T22

17

22.7

29.4

9.1

6.7

28.6

17.4

0

0

12

71.4

83.3

83.3

41.7

6.2

5.9

60.0

75.0

T23

49

95.6

87.8

64.3

17.0

18.2

53.3

66.0

62.3

49

95.3

83.7

64.3

17.0

0

0

66.0

62.3

T24

3

13.3

66.7

66.7

66.7

50.0

73.3

1

5.6

100

0

0

50.0

61.5

T25

100

68.2

20.0

23.5

81.8

81.8

58.3

31.8

73.9

77.3

55.6

90.9

T26

34

43.8

41.2

75.0

27.3

20.8

33.3

0

0

24

61.5

66.7

21.4

12.5

18.2

60.0

18.2

8.3

T27

7

43.8

87.5

0

0

0

0

6.7

22.2

8

50.0

91.7

20.0

22.2

0

0

0

0

  1. aInt n is the number of residues on actual interface in complex.
  2. bAcc (%) is the accuracy of the corresponding method on the data set.
  3. cCov (%) is the coverage of the corresponding method on the data set.
  4. dThe values for these methods are from literatures [10, 14].