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Table 6 Detailed Results of DoBi, metaPPI, meta-PPISP and PPI-Pred on 27 targets

From: Protein-protein binding site identification by enumerating the configurations

  Protein 1 Protein 2
Complex   DoBi metaPPId meta-PPISPd PPI-Predd   DoBi metaPPId meta-PPISP PPI-Pred
  Int n a Acc b Cov c Acc Cov Acc Cov Acc Cov Int n Acc Cov Acc Cov Acc Cov Acc Cov
T01 11 46.2 54.5 83.3 62.5 13 38.9 53.8 0 0
T02 7 24.1 100 72.2 43.3 6 21.4 100 0 0
T03 10 12.0 30.0 60.0 75.0 15 32.0 53.3 19.6 18.0
T04 19 50.0 89.5 0 0 58.3 38.9 2.4 3.6 18 37.5 100 64.3 40.9 0 0 71.4 68.2
T05 20 29.2 35.0 0 0 52.6 33.3 4.8 9.1 17 14.3 35.3 90.0 39.1 4.5 7.7 38.9 30.4
T06 23 28.6 34.8 71.4 29.4 39.1 27.3 59.5 73.5 29 38.1 27.6 28.6 15.4 25.8 66.7 4.5 3.8
T07 15 52.9 60.0 33.3 30.8 33.3 30.8 0 0 11 15.4 18.2 7.7 5.6 5.6 4.3 0 0
T08 25 37.9 44.0 0 0 9.5 8.3 0 0 23 64.0 69.6 30.0 11.5 0 0 7.9 11.5
T09 37 90.5 51.4 80.0 20.0 0 0 25.8 20.0 37 76.7 62.2 45.5 12.5 0 0 16.1 12.5
T10 46 40.0 47.8 10.0 47.4 53 50.0 49.1 0 0
T11 12 50.0 91.7 86.7 59.1 45.8 50.0 28 71.9 82.1 81.8 50.0 56.5 72.2
T12 12 16.7 25.0 93.8 62.5 61.5 30.8 45.5 41.7 28 86.4 67.9 55.6 33.3 36.0 45.0 22.2 13.3
T13 10 33.3 100 0 0 8 44.4 100 72.0 85.7
T14 53 52.2 22.6 10.0 2.3 6.8 33.3 8.6 7.0 63 42.3 17.5 50.0 13.2 13.5 19.2 2.0 2.6
T15 23 95.0 82.6 0 0 63.2 50.0 5.0 11.1 19 81.0 89.5 15.8 33.3 56.5 72.2 9.1 11.1
T16 55.6 21.7 87.0 74.1 0 0 100 29.0 25.0 53.8 61.8 67.7
T17 0 0 23.1 12.5 0 0 92.9 65.0 0 0 33.3 45.0
T18 24 53.6 62.5 85.7 50.0 42.9 36.0 46.2 50.0 31 50.0 35.5 0 0 52.2 36.4 2.1 3.4
T19 12 68.8 91.7 33.3 28.0 12 45.0 75.0 69.2 62.1
T20 47 53.6 31.9 94.4 37.8 23.8 90.9 28.6 22.2 35 72.2 37.1 72.2 36.1 34.3 54.5 23.2 63.9
T21 17 73.7 82.4 0 0 0 0 3.0 6.7 15 55.6 66.7 0 0 33.3 20.8 0 0
T22 17 22.7 29.4 9.1 6.7 28.6 17.4 0 0 12 71.4 83.3 83.3 41.7 6.2 5.9 60.0 75.0
T23 49 95.6 87.8 64.3 17.0 18.2 53.3 66.0 62.3 49 95.3 83.7 64.3 17.0 0 0 66.0 62.3
T24 3 13.3 66.7 66.7 66.7 50.0 73.3 1 5.6 100 0 0 50.0 61.5
T25 100 68.2 20.0 23.5 81.8 81.8 58.3 31.8 73.9 77.3 55.6 90.9
T26 34 43.8 41.2 75.0 27.3 20.8 33.3 0 0 24 61.5 66.7 21.4 12.5 18.2 60.0 18.2 8.3
T27 7 43.8 87.5 0 0 0 0 6.7 22.2 8 50.0 91.7 20.0 22.2 0 0 0 0
  1. aInt n is the number of residues on actual interface in complex.
  2. bAcc (%) is the accuracy of the corresponding method on the data set.
  3. cCov (%) is the coverage of the corresponding method on the data set.
  4. dThe values for these methods are from literatures [10, 14].