Table 8 Detailed Comparison to PINUP and ProMate
From: Protein-protein binding site identification by enumerating the configurations
PDBa | Complex | Int n b | DoBi | PINUPg | ProMatef | |||
|---|---|---|---|---|---|---|---|---|
Accc | Covd | Acc | Cov | Acc | Cov | |||
1a19A | 1brs(A:D) | 16 | 86.7 | 81.3 | 72.2 | 81.3 | 100 | 29 |
1a2pA | 1brs(D:A) | 19 | 76.2 | 84.2 | 63.6 | 73.7 | 90 | 19 |
1a5e_ | 1bi7(B:A) | 30 | 82.1 | 76.7 | 41.2 | 23.3 | 88 | 10 |
1acl_ | 1fss(A:B) | 25 | 36.7 | 72.0 | 35.9 | 56.0 | 24 | 14 |
1ag6_ | 2pcf(A:B) | 24 | 65.0 | 54.2 | 56.3 | 37.5 | 70 | 16 |
1aje_ | 1am4(D:A) | 18 | 57.1 | 22.2 | 60.0 | 33.3 | 72 | 30 |
1ajw_ | 1cc0(E:A) | 9 | 50.0 | 88.9 | 66.7 | 66.7 | 73 | 24 |
1aueA | 1fap(B:A) | 8 | 58.3 | 87.5 | 15.8 | 37.5 | 90 | 35 |
1avu_ | 1avw(B:A) | 15 | 30.0 | 40.0 | 66.7 | 93.3 | 100 | 29 |
1aye_ | 1dtd(A:B) | 22 | 42.1 | 36.4 | 44.4 | 54.5 | 54 | 24 |
1b1eA | 1a4y(B:A) | 32 | 38.7 | 37.5 | 88.2 | 46.9 | 69 | 24 |
1bip_ | 1tmq(B:A) | 29 | 66.7 | 55.2 | 61.1 | 37.9 | 100 | 27 |
1ctm_ | 2pcf(B:A) | 21 | 62.1 | 85.7 | 38.1 | 38.1 | 100 | 12 |
1cto_ | 1cd9(B:A) | 6 | 40.0 | 33.3 | 35.3 | 100 | 36 | 29 |
1cye_ | 1eay(A:B) | 16 | 55.6 | 62.5 | 5.6 | 6.3 | 0 | 0 |
1d0nA | 1c0f(S:A) | 27 | 46.2 | 44.4 | 0 | 0 | 67 | 3 |
1d2bA | 1uea(B:A) | 19 | 66.7 | 52.6 | 78.6 | 57.9 | 92 | 31 |
1ekxA | 1d09(A:B) | 21 | 64.5 | 95.2 | 0 | 0 | 0 | 0 |
1ex3A | 1cgi(E:I) | 33 | 61.1 | 33.3 | 68.2 | 45.5 | 100 | 29 |
1ez3A | 1dn1(B:A) | 18 | 88.9 | 44.4 | 47.1 | 44.4 | 100 | 6 |
1eza_ | 3eza(A:B) | 21 | 64.0 | 76.2 | 0 | 0 | 0 | 0 |
1eztA | 1agr(E:A) | 22 | 57.1 | 54.5 | 22.2 | 18.2 | 54 | 13 |
1f00I | 1f02(I:T) | 17 | 31.6 | 35.3 | 0 | 0 | 0 | 0 |
1f5wA | 1kac(B:A) | 21 | 71.4 | 71.4 | 25.0 | 23.8 | 100 | 6 |
1fkl_ | 1b6c(A:B) | 19 | 54.5 | 63.2 | 75.0 | 47.4 | 100 | 20 |
1flzA | 1eui(A:C) | 25 | 42.9 | 96.0 | 77.3 | 68.0 | 52 | 19 |
1fvhA | 1dn1(A:B) | 42 | 51.4 | 45.2 | 53.3 | 38.1 | 0 | 0 |
1g4kA | 1uea(A:B) | 30 | 46.2 | 40.0 | 43.8 | 23.3 | 78 | 21 |
1gc7A | 1ef1(A:C) | 18 | 71.4 | 55.6 | 28.6 | 11.1 | 78 | 6 |
1gnc_ | 1cd9(A:B) | 15 | 43.7 | 46.7 | 21.4 | 20.0 | 6 | 2 |
1hh8A | 1e96(B:A) | 14 | 50.0 | 35.7 | 44.0 | 78.6 | 50 | 2 |
1hplA | 1eth(A:B) | 19 | 20.0 | 36.8 | 8.7 | 10.5 | 7 | 3 |
1hu8A | 1ycs(A:B) | 8 | 37.5 | 75.0 | 31.6 | 75.0 | 5 | 2 |
1iob_ | 1itb(A:B) | 38 | 38.1 | 21.1 | 46.7 | 18.4 | 31 | 6 |
1j6zA | 1c0f(A:S) | 29 | 28.2 | 75.9 | 34.6 | 31.0 | 0 | 0 |
1jae_ | 1tmq(A:B) | 32 | 60.0 | 65.6 | 83.3 | 46.9 | 50 | 13 |
1lba_ | 1aro(L:P) | 16 | 8.6 | 18.8 | 40.0 | 37.5 | 60 | 24 |
1nobA | 1kac(A:B) | 15 | 50.0 | 73.3 | 0 | 0 | 7 | 3 |
1nos_ | 1noc(A:B) | 9 | 33.3 | 44.4 | 0 | 0 | 0 | 0 |
1pco_ | 1eth(B:A) | 15 | 77.8 | 46.7 | 16.7 | 20.0 | 60 | 12 |
1pne_ | 1hlu(P:A) | 25 | 65.7 | 92.0 | 93.8 | 60.0 | 0 | 0 |
1poh_ | 1ggr(B:A) | 10 | 57.1 | 40.0 | 72.7 | 80.0 | 0 | 0 |
1ppp_ | 1stf(E:I) | 29 | 79.3 | 79.3 | 47.4 | 31.0 | 91 | 30 |
1qqrA | 1bml(C:A) | 7 | 33.3 | 28.6 | 38.5 | 71.4 | 85 | 32 |
1rgp_ | 1am4(A:D) | 16 | 55.0 | 68.8 | 36.8 | 43.8 | 50 | 5 |
1selA | 1cse(E:I) | 29 | 75.0 | 93.1 | 60.9 | 48.3 | 61 | 27 |
1vin_ | 1fin(B:A) | 29 | 40.0 | 34.5 | 50.0 | 51.7 | 0 | 0 |
1wer_ | 1wq1(G:R) | 33 | 67.7 | 63.6 | 70.6 | 36.4 | 0 | 0 |
1xpb_ | 1jtg(A:B) | 32 | 69.2 | 56.3 | 89.5 | 53.1 | 0 | 0 |
2bnh_ | 1a4y(A:B) | 38 | 38.5 | 39.5 | 37.8 | 36.8 | 100 | 4 |
2cpl_ | 1ak4(A:D) | 17 | 61.9 | 76.5 | 78.6 | 64.7 | 76 | 23 |
2f3gA | 1ggr(A:B) | 18 | 50.0 | 50.0 | 64.7 | 61.1 | 100 | 12 |
2nef_ | 1avz(B:A) | 10 | 56.3 | 90.0 | 30.8 | 40.0 | 57 | 24 |
2rgf_ | 1lfd(A:B) | 14 | 52.4 | 78.6 | 27.8 | 35.7 | 20 | 5 |
3ssi_ | 2sic(I:E) | 15 | 80.0 | 80.0 | 68.2 | 100 | 100 | 24 |
6ccp_ | 2pcb(A:B) | 9 | 23.5 | 44.4 | 28.6 | 66.7 | 0 | 0 |
Bounde | 1jtg(B:A) | 32 | 81.1 | 93.8 | 65.0 | 40.6 | 94 | 22 |