TY - JOUR AU - Howe, D. AU - Costanzo, M. AU - Fey, P. AU - Gojobori, T. AU - Hannick, L. PY - 2008 DA - 2008// TI - The future of biocuration JO - Nature VL - 455 UR - https://doi.org/10.1038/455047a DO - 10.1038/455047a ID - Howe2008 ER - TY - JOUR AU - Rzhetsky, A. AU - Seringhaus, M. AU - Gerstein, M. PY - 2008 DA - 2008// TI - Seeking a new biology through text mining JO - Cell VL - 134 UR - https://doi.org/10.1016/j.cell.2008.06.029 DO - 10.1016/j.cell.2008.06.029 ID - Rzhetsky2008 ER - TY - JOUR AU - Cohen, A. M. AU - Hersh, W. R. PY - 2006 DA - 2006// TI - The TREC 2004 genomics track categorization task: classifying full text biomedical documents JO - J Biomed Discov Collab VL - 1 UR - https://doi.org/10.1186/1747-5333-1-4 DO - 10.1186/1747-5333-1-4 ID - Cohen2006 ER - TY - JOUR AU - Hirschman, L. AU - Yeh, A. AU - Blaschke, C. AU - Valencia, A. PY - 2005 DA - 2005// TI - Overview of BioCreAtIvE: critical assessment of information extraction for biology JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-S1-S1 DO - 10.1186/1471-2105-6-S1-S1 ID - Hirschman2005 ER - TY - JOUR AU - Jensen, L. J. AU - Saric, J. AU - Bork, P. PY - 2006 DA - 2006// TI - Literature mining for the biologist: from information retrieval to biological discovery JO - Nature Reviews Genetics VL - 7 UR - https://doi.org/10.1038/nrg1768 DO - 10.1038/nrg1768 ID - Jensen2006 ER - TY - CHAP AU - Rodriguez-Esteban, R. PY - 2008 DA - 2008// TI - Methods in biomedical text mining BT - PhD thesis ID - Rodriguez-Esteban2008 ER - TY - CHAP AU - Krallinger, M. AU - Vazquez, M. AU - Leitner, F. AU - Valencia, A. PY - 2011 DA - 2011// TI - Results of the BioCreative III (Interaction) article classification task BT - Proceedings of BioCreative III ID - Krallinger2011 ER - TY - CHAP AU - Cohen, A. M. AU - Yang, J. AU - Hersh, W. R. PY - 2005 DA - 2005// TI - A comparison of techniques for classification and ad hoc retrieval of biomedical documents BT - The Fourteenth Text Retrieval Conference - TREC ID - Cohen2005 ER - TY - CHAP AU - Névéol, A. AU - Wilbur, W. J. AU - Lu, Z. PY - 2011 DA - 2011// TI - Extraction of data deposition statements from the literature: a method for automatically tracking research results BT - Bioinformatics ID - Névéol2011 ER - TY - CHAP AU - Shatkay, H. AU - Rzhetsky, A. AU - Wilbur, W. J. PY - 2005 DA - 2005// TI - Searching for high-utility text in the biomedical literature: a preliminary report BT - Notes of The Joint ISMB BioLINK SIG and the ACL Workshop on Linking Biological Literature, Ontologies and Databases ID - Shatkay2005 ER - TY - JOUR AU - Wilbur, W. J. AU - Rzhetsky, A. AU - Shatkay, H. PY - 2006 DA - 2006// TI - New directions in biomedical text annotations: definitions, guidelines and corpus construction JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-356 DO - 10.1186/1471-2105-7-356 ID - Wilbur2006 ER - TY - JOUR AU - Shatkay, H. AU - Pan, F. AU - Rzhetsky, A. AU - Wilbur, W. J. PY - 2008 DA - 2008// TI - Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn381 DO - 10.1093/bioinformatics/btn381 ID - Shatkay2008 ER - TY - CHAP AU - Pan, F. PY - 2006 DA - 2006// TI - Multi-dimensional fragment classification in biomedical text BT - MSc thesis ID - Pan2006 ER - TY - CHAP AU - Van Auken, K. AU - Jaffery, J. AU - Chan, J. AU - Muller, H. M. AU - Sternberg, P. W. PY - 2009 DA - 2009// TI - Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation BT - BMC Bioinformatics ID - Van Auken2009 ER - TY - CHAP AU - Dowell, K. G. AU - McAndrews-Hill, M. S. AU - Hill, D. P. AU - Drabkin, H. J. AU - Blake, J. A. PY - 2009 DA - 2009// TI - Integrating text mining into the MGI biocuration workflow BT - Database ID - Dowell2009 ER - TY - JOUR AU - Yeh, A. S. AU - Hirschman, L. AU - Morgan, A. A. PY - 2003 DA - 2003// TI - Evaluation of text data mining for database curation: lessons learned from the KDD challenge cup JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg1046 DO - 10.1093/bioinformatics/btg1046 ID - Yeh2003 ER - TY - CHAP AU - Yang, Y. AU - Liu, X. PY - 1999 DA - 1999// TI - A re-examination of text categorization methods BT - SIGIR ID - Yang1999 ER - TY - CHAP AU - Wiener, E. D. AU - Pedersen, J. O. AU - Weigend, A. S. PY - 1995 DA - 1995// TI - A neural network approach to topic spotting BT - SDAIR ID - Wiener1995 ER - TY - CHAP AU - Iwayama, M. AU - Tokunaga, T. PY - 1995 DA - 1995// TI - Cluster-based text categorization: a comparison of category search strategies BT - SIGIR ID - Iwayama1995 ER - TY - CHAP AU - Nigam, K. AU - Lafferty, J. AU - McCallum, A. PY - 1999 DA - 1999// TI - Using maximum entropy for text classification BT - Proc of IJCAI-99 Workshop on Machine Learning for Information Filtering ID - Nigam1999 ER - TY - BOOK AU - Joachims, T. PY - 2002 DA - 2002// TI - Learning to classify text using support vector machines - methods, theory, and algorithms UR - https://doi.org/10.1007/978-1-4615-0907-3 DO - 10.1007/978-1-4615-0907-3 ID - Joachims2002 ER - TY - CHAP AU - Joachims, T. PY - 1998 DA - 1998// TI - Text categorization with support vector machines: learning with many relevant features BT - Proc of ECML-98, 10th European Conference on Machine Learning PB - Springer Verlag CY - Heidelberg UR - https://doi.org/10.1007/BFb0026683 DO - 10.1007/BFb0026683 ID - Joachims1998 ER - TY - CHAP AU - Dumais, S. AU - Platt, J. AU - Heckerman, D. AU - Sahami, M. PY - 1998 DA - 1998// TI - Inductive learning algorithms and representations for text categorization BT - In VIKM '98, Proceedings of the 7th ACM Conference on Information and Knowledge Management ID - Dumais1998 ER - TY - BOOK AU - Manning, C. D. AU - Raghavan, P. AU - Schütze, H. PY - 2008 DA - 2008// TI - Introduction to Information Retrieval UR - https://doi.org/10.1017/CBO9780511809071 DO - 10.1017/CBO9780511809071 ID - Manning2008 ER - TY - JOUR AU - Forman, G. PY - 2003 DA - 2003// TI - An extensive empirical study of feature selection metrics for text classification JO - Journal of Machine Learning Research VL - 3 ID - Forman2003 ER - TY - CHAP AU - Yang, Y. AU - Pedersen, J. O. PY - 1997 DA - 1997// TI - A comparative study on feature selection in text categorization BT - In Machine Learning: Proceedings of the Fourteenth International Conference (ICML '97) ID - Yang1997 ER - TY - JOUR AU - Doan, S. AU - Horiguchi, S. PY - 2005 DA - 2005// TI - Improving text categorization by multicriteria feature selection JO - Journal of Advanced Computational Intelligence and Intelligent Informatics VL - 9 ID - Doan2005 ER - TY - CHAP AU - Zheng, Z. AU - Srihari, R. PY - 2003 DA - 2003// TI - Optimally combining positive and negative features for text categorization BT - Workshop on Learning from Imbalanced Datasets II, ICML ID - Zheng2003 ER - TY - CHAP AU - Debole, F. AU - Sebastiani, F. PY - 2003 DA - 2003// TI - Supervised term weighting for automated text categorization BT - Proceedings of the 2003 ACM Symposium on Applied Computing ID - Debole2003 ER - TY - CHAP AU - Lan, M. AU - Tan, C. AU - Low, H. AU - Sung, S. PY - 2005 DA - 2005// TI - A comprehensive comparative study on term weighting schemes for text categorization with support vector machines BT - The Fourteenth International World Wide Web Conference ID - Lan2005 ER - TY - BOOK AU - Vapnik, V. N. PY - 1995 DA - 1995// TI - The Nature of Statistical Learning Theory UR - https://doi.org/10.1007/978-1-4757-2440-0 DO - 10.1007/978-1-4757-2440-0 ID - Vapnik1995 ER - TY - CHAP AU - Joachims, T. ED - Schölkopf, B. ED - Burges, C. ED - Smola, A. PY - 1999 DA - 1999// TI - Making large-scale SVM learning practical BT - Advances in Kernel Methods - Support Vector Learning ID - Joachims1999 ER - TY - BOOK AU - Chang, C. C. AU - Lin, C. J. PY - 2001 DA - 2001// TI - LIBSVM: a library for support vector machines ID - Chang2001 ER - TY - CHAP AU - Mavroeidis, D. AU - Tsatsaronis, G. AU - Vazirgiannis, M. AU - Theobald, M. AU - Weikum, G. PY - 2005 DA - 2005// TI - Word sense disambiguation for exploiting hierarchical thesauri in text classification BT - Knowledge discovery in databases: PKDD ID - Mavroeidis2005 ER - TY - BOOK AU - Pilászy, I. PY - 2005 DA - 2005// TI - Text categorization and support vector machines ID - Pilászy2005 ER - TY - CHAP AU - Hersh, W. AU - Cohen, A. AU - Yang, J. AU - Bhupatiraju, R. T. AU - Roberts, P. AU - Hearst, M. PY - 2005 DA - 2005// TI - TREC 2005 genomic track overview BT - The Fourteenth Text Retrieval Conference -TREC ID - Hersh2005 ER - TY - JOUR AU - Chawla, N. AU - Japkowicz, N. AU - Kolcz, A. PY - 2004 DA - 2004// TI - Editorial, Special issue on learning from imbalanced data sets JO - SIGKDD Explorations VL - 691 UR - https://doi.org/10.1145/1007730.1007733 DO - 10.1145/1007730.1007733 ID - Chawla2004 ER - TY - CHAP AU - Wang, B. X. AU - Japkowicz, N. PY - 2008 DA - 2008// TI - Boosting support vector machines from imbalanced data sets BT - ISMIS ID - Wang2008 ER - TY - CHAP AU - Brank, J. AU - Grobelnik, M. AU - Milić-Frayling, N. AU - Mladenić, D. PY - 2003 DA - 2003// TI - Training text classifiers with SVM on very few po sitive examples BT - Technical report. MSR-TR-2003-34 ID - Brank2003 ER - TY - CHAP AU - Forman, G. PY - 2007 DA - 2007// TI - BNS feature scaling: an improved representation over TF-IDF for SVM text classification BT - HPL-2007-32R1 ID - Forman2007 ER - TY - CHAP AU - Ando, R. K. AU - Dredze, M. AU - Zhang, T. PY - 2005 DA - 2005// TI - TREC 2005 Genomics Track experiments at IBM Watson BT - The Fourteenth Text Retrieval Conference proceedings (TREC 2005) PB - Technology CY - Gaithersburg, MD ID - Ando2005 ER - TY - CHAP AU - Si, L. AU - Kanungo, T. PY - 2005 DA - 2005// TI - Thresholding strategies for text classifiers: TREC 2005 biomedical triage task experiments BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg, MD ID - Si2005 ER - TY - CHAP AU - Lam, W. AU - Han, Y. AU - Chan, K. PY - 2005 DA - 2005// TI - Pattern-based customized learning for TREC Genomics Track categorization task BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg MD ID - Lam2005 ER - TY - CHAP AU - Aronson, A. R. PY - 2005 DA - 2005// TI - Fusion of knowledge-intensive and statistical approaches for retrieving and annotating textual genomics documents BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg. MD ID - Aronson2005 ER - TY - CHAP AU - Niu, J. PY - 2005 DA - 2005// TI - WIM at TREC 2005 BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg, MD ID - Niu2005 ER - TY - CHAP AU - Yang, Z. PY - 2005 DA - 2005// TI - TREC 2005 Genomics Track experiments at DUTAI BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg, MD ID - Yang2005 ER - TY - CHAP AU - Subramaniam, L. V. AU - Mukherjea, S. AU - Punjani, D. PY - 2005 DA - 2005// TI - Biomedical document triage: automatic classification exploiting category specific knowledge BT - The Fourteenth Text Retrieval Conference Proceedings (TREC 2005) PB - Technology CY - Gaithersburg, MD ID - Subramaniam2005 ER - TY - CHAP AU - Hou, W. AU - Lee, C. AU - Chen, H. PY - 2006 DA - 2006// TI - Classifying biological full-text articles for multi-database curation BT - 11th Conference of the European chapter of the association for computational linguistics ID - Hou2006 ER - TY - CHAP AU - Donaldson, I. AU - Martin, J. AU - de Bruijn, B. AU - Wolting, C. AU - Lay, V. AU - Tuekam, B. AU - Zhang, S. AU - Baskin, B. AU - Bader, G. D. AU - Michalickova, K. AU - Pawson, T. AU - Hogue, C. W. PY - 2003 DA - 2003// TI - PreBIND and Textomy--mining the biomedical literature from protein-protein interactions using a support vector machine BT - BMC Bioinformatics ID - Donaldson2003 ER - TY - JOUR AU - Hirschman, J. AU - Berardini, T. Z. AU - Drabkin, H. J. AU - Howe, D. PY - 2010 DA - 2010// TI - A MOD(ern) perspective on literature curation JO - Mol Genet Genomics VL - 283 UR - https://doi.org/10.1007/s00438-010-0525-8 DO - 10.1007/s00438-010-0525-8 ID - Hirschman2010 ER - TY - STD TI - Noonburg DXpdf, http://www.foolabs.com/xpdf Xpdf, UR - http://www.foolabs.com/xpdf ID - ref51 ER - TY - JOUR AU - Müller, H. M. AU - Kenny, E. E. AU - Sternberg, P. W. PY - 2004 DA - 2004// TI - Textpresso: an ontology-based information retrieval and extraction system for biological literature JO - PLoS Biology VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020309 DO - 10.1371/journal.pbio.0020309 ID - Müller2004 ER -