TY - BOOK AU - Solomon, E. AU - Berg, L. AU - Martin, D. W. PY - 2007 DA - 2007// TI - Biology ID - Solomon2007 ER - TY - JOUR AU - Shionyu-Mitsuyama, C. AU - Shirai, T. AU - Ishida, H. AU - Yamane, T. PY - 2003 DA - 2003// TI - An empirical approach for structure-based prediction of carbohydrate-binding sites on proteins JO - Protein Eng VL - 16 UR - https://doi.org/10.1093/protein/gzg065 DO - 10.1093/protein/gzg065 ID - Shionyu-Mitsuyama2003 ER - TY - JOUR AU - Sujatha, M. S. AU - Sasidhar, Y. U. AU - Balaji, P. V. PY - 2004 DA - 2004// TI - Energetics of galactose- and glucose-aromatic amino acid interactions: implications for binding in galactose-specific proteins JO - Protein Sci VL - 13 UR - https://doi.org/10.1110/ps.04812804 DO - 10.1110/ps.04812804 ID - Sujatha2004 ER - TY - JOUR AU - Chakrabarti, R. AU - Klibanov, A. M. AU - Friesner, R. A. PY - 2005 DA - 2005// TI - Computational prediction of native protein ligand-binding and enzyme active site sequences JO - Proc Nat Acad Sci USA VL - 102 UR - https://doi.org/10.1073/pnas.0504023102 DO - 10.1073/pnas.0504023102 ID - Chakrabarti2005 ER - TY - JOUR AU - Doxey, A. C. AU - Cheng, Z. AU - Moffatt, B. A. AU - McConkey, B. J. PY - 2010 DA - 2010// TI - Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d JO - BMC Struct Biol VL - 10 UR - https://doi.org/10.1186/1472-6807-10-23 DO - 10.1186/1472-6807-10-23 ID - Doxey2010 ER - TY - JOUR AU - Gold, N. D. AU - Jackson, R. M. PY - 2006 DA - 2006// TI - Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships JO - J Mol Biol VL - 355 UR - https://doi.org/10.1016/j.jmb.2005.11.044 DO - 10.1016/j.jmb.2005.11.044 ID - Gold2006 ER - TY - JOUR AU - Cipriano, G. AU - Wesenberg, G. AU - Grim, T. AU - Jr, G. N. P. AU - Gleicher, M. PY - 2010 DA - 2010// TI - GRAPE: GRaphical Abstracted Protein Explorer JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq398 DO - 10.1093/nar/gkq398 ID - Cipriano2010 ER - TY - JOUR AU - Malik, A. AU - Ahmad, S. PY - 2007 DA - 2007// TI - Sequence and structural features of carbohydrate binding in proteins and assessment of predictability using a neural network JO - BMC Struct Biol VL - 7 UR - https://doi.org/10.1186/1472-6807-7-1 DO - 10.1186/1472-6807-7-1 ID - Malik2007 ER - TY - JOUR AU - Nassif, H. AU - Al-Ali, H. AU - Khuri, S. AU - Keirouz, W. PY - 2009 DA - 2009// TI - Prediction of protein-glucose binding sites using support vector machines JO - Proteins VL - 77 UR - https://doi.org/10.1002/prot.22424 DO - 10.1002/prot.22424 ID - Nassif2009 ER - TY - JOUR AU - Kawabata, T. PY - 2010 DA - 2010// TI - Detection of multi-scale pockets on protein surfaces using mathematical morphology JO - Proteins VL - 78 UR - https://doi.org/10.1002/prot.22639 DO - 10.1002/prot.22639 ID - Kawabata2010 ER - TY - CHAP AU - Wong, G. Y. AU - Leung, F. H. PY - 2010 DA - 2010// TI - Predicting Protein-Ligand Binding Site with Support Vector Machine BT - Proceedings of the IEEE Congress on Evolutionary Computation ID - Wong2010 ER - TY - CHAP AU - Nassif, H. AU - Al-Ali, H. AU - Khuri, S. AU - Keirouz, W. AU - Page, D. PY - 2009 DA - 2009// TI - An inductive logic programming approach to validate hexose biochemical knowledge BT - Proceedings of the 19th International Conference on ILP ID - Nassif2009 ER - TY - STD TI - Srinivasan A: The Aleph Manual. 4th 2007. [http://www.comlab.ox.ac.uk/activities/machinelearning/Aleph/aleph.html]. UR - http://www.comlab.ox.ac.uk/activities/machinelearning/Aleph/aleph.html ID - ref13 ER - TY - CHAP AU - Srinivasan, A. AU - King, R. D. AU - Muggleton, S. H. AU - Sternberg, M. J. E. PY - 1997 DA - 1997// TI - Carcinogenesis predictions using ILP BT - Proceedings of the 7th International Workshop on Inductive Logic Programming UR - https://doi.org/10.1007/3540635149_56 DO - 10.1007/3540635149_56 ID - Srinivasan1997 ER - TY - CHAP AU - Dutra, I. AU - Nassif, H. AU - Page, D. AU - Shavlik, J. AU - Strigel, R. AU - Wu, Y. AU - EM, E. AU - Burnside, E. PY - 2011 DA - 2011// TI - Integrating machine learning and physician knowledge to improve the accuracy of breast biopsy BT - American Medical Informatics Association (AMIA’11) Symposium Proceedings ID - Dutra2011 ER - TY - JOUR AU - Finn, P. AU - Muggleton, S. AU - Page, D. AU - Srinivasan, A. PY - 1998 DA - 1998// TI - Pharmacophore discovery using the inductive logic programming system PROGOL JO - Machine Learning VL - 30 UR - https://doi.org/10.1023/A:1007460424845 DO - 10.1023/A:1007460424845 ID - Finn1998 ER - TY - CHAP AU - Szaboova, A. AU - Kuzelka, O. AU - Zelezny, F. AU - Tolar, J. PY - 2010 DA - 2010// TI - Prediction of DNA-binding proteins from structural features BT - Proceedings of the 4th International Workshop on Machine Learning in Systems Biology ID - Szaboova2010 ER - TY - CHAP AU - Muggleton, S. AU - Santos, J. AU - Tamaddoni-Nezhad, A. PY - 2009 DA - 2009// TI - ProGolem: a system based on relative minimal generalisation BT - Proceedings of the 19th International Conference on ILP PB - Springer CY - Leuven, Belgium ID - Muggleton2009 ER - TY - JOUR AU - Berman, H. M. AU - Westbrook, J. AU - Feng, Z. AU - Gilliland, G. AU - Bhat, T. N. AU - Weissig, H. AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 2000 DA - 2000// TI - The protein data bank JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.1.235 DO - 10.1093/nar/28.1.235 ID - Berman2000 ER - TY - BOOK AU - Fox, M. A. AU - Whitesell, J. K. PY - 2004 DA - 2004// TI - Organic Chemistry PB - Bartlett Publishers CY - Boston, MA ID - Fox2004 ER - TY - JOUR AU - Wang, G. AU - Dunbrack, R. L. PY - 2003 DA - 2003// TI - PISCES: a protein sequence culling server JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg224 DO - 10.1093/bioinformatics/btg224 ID - Wang2003 ER - TY - JOUR AU - Yamashita, M. M. AU - Wesson, L. AU - Eisenman, G. AU - Eisenberg, D. PY - 1990 DA - 1990// TI - Where metal ions bind in proteins JO - Proceedings of the National Academy of Sciences USA VL - 87 UR - https://doi.org/10.1073/pnas.87.15.5648 DO - 10.1073/pnas.87.15.5648 ID - Yamashita1990 ER - TY - BOOK AU - Mitchell, T. M. PY - 1997 DA - 1997// TI - Machine Learning PB - McGraw-Hill International Editions CY - Singapore ID - Mitchell1997 ER - TY - JOUR AU - Kowalski, R. A. AU - Kuehner, D. PY - 1971 DA - 1971// TI - Linear resolution with selection function JO - Artif Intelligence VL - 2 UR - https://doi.org/10.1016/0004-3702(71)90012-9 DO - 10.1016/0004-3702(71)90012-9 ID - Kowalski1971 ER - TY - CHAP AU - Santos, J. AU - Muggleton, S. PY - 2010 DA - 2010// TI - Subsumer: A Prolog theta-subsumption engine BT - Technical communications of the International Conference on Logic Programming ID - Santos2010 ER - TY - JOUR AU - Sujatha, M. S. AU - Balaji, P. V. PY - 2004 DA - 2004// TI - Identification of common structural features of binding sites in galactose-specific proteins JO - Proteins VL - 55 UR - https://doi.org/10.1002/prot.10612 DO - 10.1002/prot.10612 ID - Sujatha2004 ER - TY - JOUR AU - Breiman, L. PY - 2001 DA - 2001// TI - Random forests JO - Machine Learning VL - 45 UR - https://doi.org/10.1023/A:1010933404324 DO - 10.1023/A:1010933404324 ID - Breiman2001 ER - TY - JOUR AU - Díaz-Uriarte, R. AU - de, A. n. d. r. é. s. PY - 2006 DA - 2006// TI - Gene selection and classification of microarray data using random forest JO - BMC Bioinf VL - 7 UR - https://doi.org/10.1186/1471-2105-7-3 DO - 10.1186/1471-2105-7-3 ID - Díaz-Uriarte2006 ER - TY - CHAP AU - Santos Costa, V. ED - de la Banda, M. G. ED - Pontelli, E. PY - 2008 DA - 2008// TI - The life of a logic programming system BT - Proceedings of the 24th International Conference on Logic Programming PB - Springer-Verlag CY - Udine, Italy ID - Santos Costa2008 ER - TY - JOUR AU - Orengo, C. AU - Michie, A. AU - Jones, S. AU - Jones, D. AU - Swindells, M. PY - 1997 DA - 1997// TI - CATH—a hierarchic classification of protein domain structures JO - Structure VL - 5 UR - https://doi.org/10.1016/S0969-2126(97)00260-8 DO - 10.1016/S0969-2126(97)00260-8 ID - Orengo1997 ER - TY - JOUR AU - Jain, A. K. AU - Duin, R. P. W. AU - Mao, J. PY - 2000 DA - 2000// TI - Statistical pattern recognition: a review JO - IEEE Trans Pattern Analysis Machine Intelligence VL - 22 UR - https://doi.org/10.1109/34.824819 DO - 10.1109/34.824819 ID - Jain2000 ER - TY - BOOK AU - Vapnik, V. N. PY - 1998 DA - 1998// TI - Statistical Learning Theory PB - Sons CY - New York ID - Vapnik1998 ER - TY - JOUR AU - Kononenko, I. AU - Simec, E. AU - Robnik-Sikonja, M. PY - 1997 DA - 1997// TI - Overcoming the myopia of inductive learning algorithms with RELIEFF JO - Appl Intell VL - 7 UR - https://doi.org/10.1023/A:1008280620621 DO - 10.1023/A:1008280620621 ID - Kononenko1997 ER - TY - JOUR AU - Rao, V. S. R. AU - Lam, K. AU - Qasba, P. K. PY - 1998 DA - 1998// TI - Architecture of the sugar binding sites in carbohydrate binding proteins—a computer modeling study JO - Int J Biol Macromol VL - 23 UR - https://doi.org/10.1016/S0141-8130(98)00056-7 DO - 10.1016/S0141-8130(98)00056-7 ID - Rao1998 ER - TY - JOUR AU - Zhang, Y. AU - Swaminathan, G. J. AU - Deshpande, A. AU - Boix, E. AU - Natesh, R. AU - Xie, Z. AU - Acharya, K. R. AU - Brew, K. PY - 2003 DA - 2003// TI - Roles of individual enzyme-substrate interactions by alpha-1,3-galactosyltransferase in catalysis and specificity JO - Biochemistry VL - 42 UR - https://doi.org/10.1021/bi035430r DO - 10.1021/bi035430r ID - Zhang2003 ER - TY - CHAP AU - Quiocho, F. A. AU - Vyas, N. K. ED - Hecht, S. M. PY - 1999 DA - 1999// TI - Atomic interactions between proteins/enzymes and carbohydrates BT - Bioorganic Chemistry: Carbohydrates PB - Oxford University Press CY - New York ID - Quiocho1999 ER - TY - JOUR AU - Screen, J. AU - Stanca-Kaposta, E. C. AU - Gamblin, D. P. AU - Liu, B. AU - Macleod, N. A. AU - Snoek, L. C. AU - Davis, B. G. AU - Simons, J. P. PY - 2007 DA - 2007// TI - IR-spectral signatures of aromatic–sugar complexes: probing carbohydrate–protein interactions JO - Angew Chem Int Ed VL - 46 UR - https://doi.org/10.1002/anie.200605116 DO - 10.1002/anie.200605116 ID - Screen2007 ER - TY - JOUR AU - Boraston, A. B. AU - Bolam, D. N. AU - Gilbert, H. J. AU - Davies, G. J. PY - 2004 DA - 2004// TI - Carbohydrate-binding modules: fine-tuning polysaccharide recognition JO - Biochem J VL - 382 UR - https://doi.org/10.1042/BJ20040892 DO - 10.1042/BJ20040892 ID - Boraston2004 ER - TY - JOUR AU - Taroni, C. AU - Jones, S. AU - Thornton, J. M. PY - 2000 DA - 2000// TI - Analysis and prediction of carbohydrate binding sites JO - Protein Eng VL - 13 UR - https://doi.org/10.1093/protein/13.2.89 DO - 10.1093/protein/13.2.89 ID - Taroni2000 ER -