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Table 2 Pore-lining residue, pore-lining helix, topology and pore stoichiometry results for all targets

From: Detecting pore-lining regions in transmembrane protein sequences

Target Per-residue MCC Pore-lining helices Topology Pore stoichiometry
Observed Predicted Correct Over/Under Observed Predicted
1E12_A 0.04 4 2 1 0 1 1
1FFT_A 0.28 3 3 0 3 1 1
1KQG_B −0.42 1 0 0 0 6 6
1KQG_C 0.03 2 0 1 0 6 5
1L7V_B 0.63 2 2 0 1 2 1
1LDI_A 0.41 5 2 1 0 1 3
1LNQ_A 0.76 1 0 1 0 4 4
1P7B_A 0.52 1 1 1 0 4 4
1PW4_A 0.50 7 3 1 0 1 1
1R3J_C 0.54 1 0 1 0 4 6
1T9Y_A 0.31 6 2 0 −4 1 1
1XL6_A 0.51 1 1 1 0 4 4
1XME_A 0.27 3 3 1 0 1 1
1XQF_A 0.52 5 4 0 −1 1 1
1Z98_A 0.35 3 3 1 0 1 1
1ZLL_E 0.00 1 0 0 0 5 3
2AHY_A 0.52 1 0 1 0 4 5
2B2F_A 0.49 4 3 0 −2 1 1
2BG9_A 0.15 1 1 1 0 5 2
2BG9_E 0.37 1 1 1 0 5 2
2C3E_A −0.10 6 3 0 −2 1 1
2C8L_A 0.37 4 3 1 0 1 1
2D57_A 0.28 4 3 1 0 1 1
2F2B_A 0.05 3 1 1 0 1 3
2GFP_A 0.24 6 2 1 0 1 1
2HYD_A 0.22 4 1 0 −1 2 2
2OAR_A 0.00 1 1 1 0 5 3
2OAU_A 0.11 1 0 1 0 7 4
2ONK_C 0.49 3 1 1 0 2 2
2QFI_A 0.26 2 1 1 0 2 3
2QKS_A 0.44 1 1 1 0 4 4
2QTS_A 0.50 1 1 1 0 3 5
2R6G_F 0.33 2 1 1 0 2 2
2R6G_G 0.07 3 1 1 0 2 1
2RDD_B −0.61 1 0 0 0 3 5
2W2E_A 0.38 4 3 1 0 1 1
2ZW3_A −0.36 1 0 1 0 6 3
3B8C_A 0.45 5 3 1 0 1 1
3B9W_A 0.46 5 4 1 0 1 1
3BEH_A 0.22 1 0 0 −1 4 2
3C02_A 0.37 4 4 1 0 1 1
3DDL_A 0.11 4 2 1 0 1 1
3DHW_A 0.20 2 1 1 0 2 2
3EAM_A 0.30 1 0 0 −1 5 3
3GIA_A 0.32 4 3 1 0 1 1
3H9V_A 0.13 2 1 1 0 3 4
3HD6_A 0.50 4 4 1 0 1 1
3K3F_A 0.44 4 2 1 0 1 1
3KG2_A 0.37 1 1 0 1 4 1
3MKT_A 0.32 5 4 1 0 1 1
3O0R_B 0.11 5 0 1 0 1 1
3P5N_A 0.10 4 3 1 0 1 1
  1. A correct topology (requiring the correct number and placement of all transmembrane helices but not N-terminus) is indicated by 1, and otherwise 0. Over/Under corresponds to the number of over-predicted or under-predicted transmembrane helices.