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Table 2 Number of KOIs present in individual k -mer assemblies but missing from the combined assemblies generated with different programs

From: Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms

k OASES multi-kmerged CD-HIT-EST (0.90)1 CD-HIT-EST (0.95)1 CD-HIT-EST (1.0)1 VMATCH
19 58 108 86 33 481
21 19 55 41 9 433
23 9 37 23 3 402
25 7 44 28 4 409
27 8 45 29 5 415
29 8 53 36 7 420
31 8 47 30 8 413
33 10 43 27 9 413
35 13 51 35 8 422
37 17 60 40 10 432
39 19 57 38 9 412
41 17 59 45 9 412
43 22 63 49 14 413
45 22 67 52 14 420
47 24 76 58 19 426
49 33 81 63 25 432
51 36 89 73 28 446
53 38 95 75 33 447
55 42 100 80 35 449
57 46 103 83 37 460
59 55 113 93 42 473
61 56 112 97 43 468
63 68 125 110 52 472
TOTAL 635 1683 1291 456 9970
  1. 1Represents sequence identity.