Table 3 The performance of our metabolic reaction extraction method on three evaluation pathways
From: A text-mining system for extracting metabolic reactions from full-text articles
Correct reactions | Correct | |
|---|---|---|
(ignoring enzyme) | (including enzyme) | |
Pantothenate and coenzyme A biosynthesis pathway | ||
Recall(P) (%) | 78 (7/9) | 56 (5/9) |
Precision (%) | 59 (24/41) | 41 (17/41) |
Tetrahydrofolate biosynthesis pathway | ||
Recall(P) (%) | 90 (9/10) | 70 (7/10) |
Precision (%) | 60 (39/65) | 38 (25/65) |
Aerobic fatty acid β-oxidation I pathway | ||
Recall(P) (%) | 29 (2/7) | 29 (2/7) |
Precision (%) | 30 (11/37) | 14 (5/37) |