Skip to main content

Table 4 Binary interaction extraction for all three evaluation pathways

From: A text-mining system for extracting metabolic reactions from full-text articles

 

Substrate–product

Substrate–enzyme

Product–enzyme

Total

  Pantothenate and coenzyme A biosynthesis pathway

Recall(P) (%)

67 (10/15)

58 (7/12)

55 (6/11)

61 (23/38)

Precision (%)

59 (35/59)

65 (13/20)

59 (13/22)

60 (61/101)

  Tetrahydrofolate biosynthesis pathway

Recall(P) (%)

82 (9/11)

64 (7/11)

70 (7/10)

78 (25/32)

Precision (%)

48 (55/114)

62 (28/45)

58 (26/45)

53 (109/204)

  Aerobic fatty acid β-oxidation I pathway

Recall(P) (%)

20 (2/10)

38 (3/8)

38 (3/8)

31 (8/26)

Precision (%)

40 (12/30)

80 (8/10)

67 (6/9)

53 (26/49)

  Reactome dataset

Recall(P) (%)

63 (737/1167)

37 (166/439)

36 (157/439)

52 (1060/2045)

Precision (%)

88 (749/856)

72 (169/235)

67 (157/234)

81 (1075/1325)

  1. Numbers in brackets were calculated as for Table 3.