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Table 2 MAQC brain experiment 2 using auto calibration: per-read error rate estimates

From: Estimation of sequencing error rates in short reads

Sample

sr estimate

sr standard error

mm estimate

SRR037452

0.27

0.0037

0.35

SRR037453

0.16

0.0031

0.25

SRR037454

0.16

0.0041

0.27

SRR037455

0.15

0.0027

0.23

SRR037456

0.17

0.0040

0.27

SRR037457

0.15

0.0031

0.24

SRR037458

0.24

0.0031

0.33

SRR037459

0.20

0.0036

0.28

SRR037460

0.20

0.0051

0.32

SRR037461

0.18

0.0041

0.27

SRR037462

0.19

0.0049

0.29

SRR037463

0.18

0.0041

0.27

SRR037464

0.19

0.0054

0.31

SRR037465

0.18

0.0038

0.26

  1. Shadow regression is abbreviated “sr”. Mismatch-counting is abbreviated “mm”.
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BMC Bioinformatics

ISSN: 1471-2105

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