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Table 5 SAGE data: human colorectal and pancreatic samples

From: Estimation of sequencing error rates in short reads

Sample

sr estimate

sr standard error

91-16113

0.04

0.0064

96-6252

0.02

0.0053

ASPC

0.04

0.0041

CACO2

0.09

0.0094

CAPAN1

0.08

0.0117

H126

0.09

0.0082

HCT116

0.09

0.0111

HX

0.09

0.0085

NC1

0.08

0.0064

NC2

0.07

0.0052

PANC1

0.08

0.0063

PL45

0.07

0.0062

RKO

0.10

0.0104

SW837

0.07

0.0081

TU102

0.07

0.0071

TU98

0.08

0.0087

  1. Per-read error rate estimates and standard errors from shadow regression.
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BMC Bioinformatics

ISSN: 1471-2105

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