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Table 2 Statistics on the assembly of Y. Pestis KIM with optical maps of different error rates

From: AGORA: Assembly Guided by Optical Restriction Alignment

  Sequence Correct Edges Correct Landmarks Final Contigs N50 Size
Low Error 99.13% 192/199 64 12 1,190,834
Med Error 97.57% 188/199 38 20 905,369
High Error 90.52% 169/199 25 81 776,452
Map from [13] 86.74% 149/199 26 80 405,321
  1. A summary of the results of our algorithm on assembling Y. Pestis KIM, when given a de Bruijn graph with k-mer size 500, and a simulated optimal or experimental optical map from [13].