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Table 2 Statistics on the assembly of Y. Pestis KIM with optical maps of different error rates

From: AGORA: Assembly Guided by Optical Restriction Alignment

 

Sequence Correct

Edges Correct

Landmarks

Final Contigs

N50 Size

Low Error

99.13%

192/199

64

12

1,190,834

Med Error

97.57%

188/199

38

20

905,369

High Error

90.52%

169/199

25

81

776,452

Map from [13]

86.74%

149/199

26

80

405,321

  1. A summary of the results of our algorithm on assembling Y. Pestis KIM, when given a de Bruijn graph with k-mer size 500, and a simulated optimal or experimental optical map from [13].
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BMC Bioinformatics

ISSN: 1471-2105

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