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Figure 3 | BMC Bioinformatics

Figure 3

From: Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data

Figure 3

Recall rates by method, contamination, and alteration copy number and length. (A) Recall rates (y-axis) of each of the assessed methods, calculated by contamination over each of the 5 synthetic sample sets. Colour code: GAP (orange), updated GAP (golden), ASCAT (purple), GPHMM (black), OncoSNP (blue), GenoCNA (green), MixHMM (grey). (B) Recall rates (y-axis) of each of the assessed methods, calculated by contamination and alteration copy number over each of the 5 synthetic sample sets. Colour code: GAP (orange), updated GAP (golden), ASCAT (purple), GPHMM (black), OncoSNP (blue), GenoCNA (green), MixHMM (grey).

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