MixHMM | GenoCNA | GPHMM | OncoSNP | ASCAT | GAP | |
---|---|---|---|---|---|---|
User-definable noise levels | Yes | No | No | No | No | Yes |
User-definable LRR copy number means | Yes | No | No | Yes | No | Yes |
Automatic LRR shift estimation | No | No | Yes | Yes | Yes | Yes |
Automatic contamination estimation | No | Yes | Yes | Yes | Yes | Yes |
Germline and somatic LOH distinction | No | No | No | Yes | No | Yes |
Maximum copy number | 5 | 4 | 7 | 8 | ? | 8 |
Computation time | Low | Medium | Low | High | Low | Medium |