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Table 2 Comparison of normalization factor estimators on NF κ B ChIP-seq data of cell line GM12878

From: Normalization of ChIP-seq data with control

 

NCIS

CCAT

SPP

CisGenome

PeakSeq

r ̂

1.758

1.657

1.834

2.123

1.883

Π ̂ 0

0.895

0.844

0.933

1.082

0.958

  1. The sequencing depth ratio is 1.963.