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Table 2 Comparison of normalization factor estimators on NF κ B ChIP-seq data of cell line GM12878

From: Normalization of ChIP-seq data with control

  NCIS CCAT SPP CisGenome PeakSeq
r ̂ 1.758 1.657 1.834 2.123 1.883
Π ̂ 0 0.895 0.844 0.933 1.082 0.958
  1. The sequencing depth ratio is 1.963.