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Table 2 Coverage values for the most specific motif from the respective library in the positive, negative and random datasets

From: An integrative computational approach to effectively guide experimental identification of regulatory elements in promoters

 

E.coli(4)a

Transfac (6)

Meme (6)

DME (2)

CMF (2)

MDScan (5)

TSS

Poly-(A)8

Positive set (C+)

0.85

0.77

0.77

0.77

0.77

0.85

0.92

0.77

Negative set (C–)

0.32

0.17

0.07

0.09

0.19

0.11

0.27

0.47

Random set (CR)

0.35

0.19

0.06

0.08

0.21

0.18

0.37

0.59

  1. aIn brackets are total number of motifs that pass specificity criteria.
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BMC Bioinformatics

ISSN: 1471-2105

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