Table 3 Results of the experimental verification of predicted modules
Predicted cis-regulatory modules | Fragments used to test the respective moduleb | ||
|---|---|---|---|
Experimental round I | Experimental round II | ||
1 | Meme1a + TSS | 301_1 (+), 48_1 (+) | 134_1 (−), 156_4 (−), 212_2 (−) |
2 | NagC + BRCZ4 + TSS | 272_1 (−) | 134_1 (−), 134_2 (−), 212_2 (−) |
3 | (FNR + NagC) OR (FNR + NagC + TSS) | 48_2 (−), 156_1 (−), 272_1 (−) | 156_4 (−), 134_1 (−), 134_2 (−) |
4 | (TGIF + FNR + NagC) OR (TGIF + FNR + NagC + TSS) | 301_1 (+), 48_1 (+) | 134_3 (+), 212_1 (+) |
5 | Meme1a + HNF1 | 301_1 (+), 48_1 (+) | 134_1 (−), 134_2 |
6 | Meme1a + FNR + NagC | 301_1 (+), 48_1 (+) | 134_1 (−), 134_2 (−), 156_4 (−) |
7 | MEF2 + TGIF | 301_2 (−) |  |
8 | BRCZ4 + HNF1 | 271_1 (−) | 134_1 (−), 134_2 (−) |
9 | (RcsAB + MDScan3) OR (RcsAB + MDScan2) | 48_2 (−) | 134_1 (−), 134_2 (−) |
10 | (DME1 + RcsAB + Poly-(A)8 + TSS) | 301_1 (+) | 156_4 (−) |
11 | MEF2 + Meme4 | 156_2 (−), 272_2 (−), 48_2 (−) |  |