From: Reconstructing DNA copy number by joint segmentation of multiple sequences
CNV size | CNV type | Â | PennCNV | Â | CBS | Â | Fused Lasso | Â | Group Fused Lasso | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | TPR | FDR |  | TPR | FDR |  | TPR | FDR |  | TPR | FDR |
5 | Deletion | Â | 83.80 | 4.92 | Â | 78.20 | 0.68 | Â | 63.93 | 1.74 | Â | 64.27 | 1.83 |
 | Duplication |  | 58.53 | 4.67 |  | 11.67 | 10.26 |  | 20.00 | 37.76 |  | 39.87 | 14.33 |
10 | Deletion | Â | 95.03 | 1.45 | Â | 88.37 | 0.56 | Â | 88.50 | 0.60 | Â | 88.87 | 0.56 |
 | Duplication |  | 93.43 | 0.78 |  | 56.50 | 4.40 |  | 83.90 | 12.60 |  | 91.60 | 3.85 |
20 | Deletion | Â | 94.63 | 0.58 | Â | 90.50 | 0.39 | Â | 90.80 | 0.47 | Â | 90.83 | 0.47 |
 | Duplication |  | 96.13 | 0.92 |  | 86.22 | 3.58 |  | 92.77 | 4.95 |  | 94.98 | 2.13 |
30 | Deletion | Â | 94.57 | 0.28 | Â | 93.30 | 0.29 | Â | 89.38 | 0.52 | Â | 89.77 | 0.53 |
 | Duplication |  | 96.09 | 0.05 |  | 90.77 | 1.61 |  | 94.32 | 1.78 |  | 94.98 | 1.29 |
40 | Deletion | Â | 97.83 | 0.59 | Â | 97.58 | 0.09 | Â | 97.28 | 0.19 | Â | 97.28 | 0.19 |
 | Duplication |  | 94.61 | 0.46 |  | 92.77 | 0.98 |  | 93.94 | 1.15 |  | 94.63 | 0.75 |
50 | Deletion | Â | 94.33 | 0.07 | Â | 92.76 | 0.04 | Â | 90.47 | 0.11 | Â | 90.48 | 0.11 |
 | Duplication |  | 94.50 | 0.09 |  | 93.81 | 0.74 |  | 93.11 | 0.79 |  | 93.64 | 0.49 |
 Overall Deletion |  | 95.02 | 0.55 |  | 93.06 | 0.19 |  | 91.08 | 0.33 |  | 91.19 | 0.34 | |
 Overall Duplication |  | 93.82 | 0.44 |  | 86.92 | 1.55 |  | 90.56 | 2.85 |  | 92.46 | 1.38 | |
 Overall |  | 94.42 | 0.49 |  | 89.99 | 0.85 |  | 90.82 | 1.60 |  | 91.83 | 0.87 | |
Time (sec.) | Â | 0.48 (0.01) | Â | 0.78 (0.69) | Â | 0.22 (0.13) | Â | 0.28 (0.05) |