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Table 3 Comparison of three CNV analyses in the bipolar disorder study

From: Reconstructing DNA copy number by joint segmentation of multiple sequences

Method

#Detected CNVR

#Overlap

%Overlap

Time (min.)

PennCNV

189

63

33.33%

3.44

GFL-Individual (LRR+BAF)

95

50

52.63%

3.90

GFL-Pedigree (LRR)

106

62

58.49%

1.57

  1. The number and overlap of CNP regions with frequency ≥0.1 detected in our sample by different methods. These CNP regions were compiled from HapMap. Computation time is given in minutes per sample.
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BMC Bioinformatics

ISSN: 1471-2105

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