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Table 3 Comparison of three CNV analyses in the bipolar disorder study

From: Reconstructing DNA copy number by joint segmentation of multiple sequences

Method #Detected CNVR #Overlap %Overlap Time (min.)
PennCNV 189 63 33.33% 3.44
GFL-Individual (LRR+BAF) 95 50 52.63% 3.90
GFL-Pedigree (LRR) 106 62 58.49% 1.57
  1. The number and overlap of CNP regions with frequency ≥0.1 detected in our sample by different methods. These CNP regions were compiled from HapMap. Computation time is given in minutes per sample.