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Table 3 Results of independent validation on ChIP-seq data

From: Searching for transcription factor binding sites in vector spaces

ENCODE JASPAR Name PSSM ULPB NPV S IC ODV S IC
GATA3_(SC-268) MA0037 GATA3 0.48922 0.46841 0.50963 1 Y 0.51441 1 Y
MEF2A MA0052 MEF2A 0.42566 0.45955 0.35283 3 Y 0.34807 3 N
PU.1 MA0080.2 SPI1 0.50631 0.49267 0.57575 3 Y 0.58014 3 N
SRF MA0083 SRF 0.34299 0.38457 0.43920 2 N 0.43183 3 N
NRSF MA0138 REST 0.50615 0.46371 0.46603 1 N 0.47956 2 N
  MA0138.2 REST 0.48031 0.48299 0.49070 3 Y 0.49522 3 N
ERalpha_a MA0112.2 ESR1 0.53980 0.49058 0.52414 3 N 0.52146 1 N
STAT1 MA0137.2 STAT1 0.55348 0.58555 0.61733 1 N 0.62338 1 Y
CTCF MA0139.1 CTCF 0.60370 0.60377 0.63785 2 Y 0.64769 2 Y
CTCF_(C-20)    0.44108 0.44696 0.53181    0.54306   
CTCF_(SC-5916)    0.46729 0.47047 0.54097    0.55028   
FOXA1_(C-20) MA0148.1 FOXA1 0.48083 0.48698 0.48994 3 Y 0.49853 3 N
FOXA1_(SC-101058)    0.48897 0.48326 0.49945    0.50986   
EBF MA0154.1 EBF1 0.50011 0.51202 0.56084 3 Y 0.59172 3 N
EBF1_(C-8)    0.42214 0.43705 0.52067    0.53207   
FOXA2_(SC-6554) MA0047.2 Foxa2 0.48328 0.39496 0.45500 3 Y 0.47906 3 N
STAT3 MA0144.1 Stat3 0.39145 0.33052 0.38094 3 Y 0.43807 3 Y
POU5F1_(SC-9081) MA0142.1 Pou5f1 0.42151 0.42793 0.40855 3 N 0.45449 3 N
  1. Subspaces (S) R 4 l , R ( 16 l 12 ) and R ( 36 l 48 ) are denoted by 1, 2 and 3, respectively.