Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray

BMC Bioinformatics

Table 3 Evaluation of segmentation combinations for both strand of chromosome 1

Integrative transcriptional analysis
Method	PPV Forward	Sensitivity Forward	PPV Reverse	Sensitivity Reverse
PMSW	0.6511	0.5873	0.5811	0.2073
SCM	0.7188	0.4390	0.6968	0.2146
ZCL	0.8675	0.3821	0.8220	0.2208
PMSW ⋂ SCM ⋂ ZCL	0.6312	0.5984	0.5441	0.2030
PMSW ⋂ ZCL	0.6448	0.5921	0.5744	0.2076
PMSW ⋂ SCM	0.6370	0.5957	0.5504	0.2043
SCM ⋂ ZCL	0.7053	0.4409	0.6626	0.2116
Majority voting	0.7247	0.4396	0.6993	0.2164

PPV and sensitivity for both strand of chromosome 1 using individual TAR detection algorithms and the combination of their results.

ISSN: 1471-2105