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Table 3 Local model quality benchmark on the CASP8/CASP9 data sets

From: Improved model quality assessment using ProQ2

Method R R target R model
ProQ2 0.70/0.68 0.58/0.54 0.54/0.47
MetaMQAP –/0.62 –/0.48 –/0.42
QMEAN 0.59/0.59 0.51/0.49 0.49/0.44
ProQ 0.52/0.49 0.46/0.42 0.45/0.40
QMEANclust 0.83/0.77 0.73/0.70 0.68/0.61
  1. Benchmark of local model quality on the CASP8/CASP9 data sets measured by correlations. R is overall Pearson’s correlation, 〈R target 〉 is the average correlation per target, 〈R model 〉 is the average correlation per model. First value correspond to CASP8, second to CASP9. The standard error is <0.002.