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Table 3 Local model quality benchmark on the CASP8/CASP9 data sets

From: Improved model quality assessment using ProQ2

Method

R

R target

R model

ProQ2

0.70/0.68

0.58/0.54

0.54/0.47

MetaMQAP

–/0.62

–/0.48

–/0.42

QMEAN

0.59/0.59

0.51/0.49

0.49/0.44

ProQ

0.52/0.49

0.46/0.42

0.45/0.40

QMEANclust

0.83/0.77

0.73/0.70

0.68/0.61

  1. Benchmark of local model quality on the CASP8/CASP9 data sets measured by correlations. R is overall Pearson’s correlation, 〈R target 〉 is the average correlation per target, 〈R model 〉 is the average correlation per model. First value correspond to CASP8, second to CASP9. The standard error is <0.002.