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Figure 2 | BMC Bioinformatics

Figure 2

From: Protein-DNA docking with a coarse-grained force field

Figure 2

Fractions of “hits” among 100 best ranking docked geometries for the original protein-RNA parameter set (P:R), optimized protein-DNA parameter set (P:D), and non-specific protein-DNA parameter set (ns). Dotted lines show the respective fractions for all obtained geometries for P:D parameters. Inset: changes in AUC (see text for description) for the training set (red) and the test set (blue) during ε parameters optimization.

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