From: AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities
Name | Caters | Intervals | Seqs | ID | Annot. | Linkout | Query | Input | Output | Annot. | Basis of | Output | Organisms | Availability | Last | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
to | to IDs | to IDs | lookup | View | mode | conversion | format | update | |||||||||
DAVID | probes, genes, | ✓ | ✓ | ✓ | ✓ | batch | select one | select | S, F | custom generated | html, txt | NA | web,API, | Sep, 2009 | |||
prots. | one | ⇓ | EASE, | ||||||||||||||
Babelomics | probes, genes, | ✓ | ✓ | batch | select one | select | S, F | custom generated | html, txt | 11 org. | web | Sep, 2009 | |||||
prots. | multiple | ||||||||||||||||
g:Convert | genes , prots. and | batch | select one | select | S, F | Ensembl | html, txt, xls | H, M, R, O | web | Jun, 2011 | |||||||
probes | one | ||||||||||||||||
HMS and IC | genes, prots. and | ✓ | ✓ | batch | select one | select | S, F | corr. files | html, txt | H, M, O | web, ⇓ | current | |||||
bio. molecules | one | ||||||||||||||||
Synergizer | probes, genes and | batch | select one | select | S | Peg/custom | html, xls | H, M, R, O | web, API | May, 2011 | |||||||
Prots. | one | generated | |||||||||||||||
Clone/Gene | genes and | ✓ | batch | select one | select | S, F | Ensembl | html, txt, xls | H, M, R | web | Apr, 2008 | ||||||
prots. | multiple | ||||||||||||||||
ID Converter | |||||||||||||||||
MADGene | probes, genes, | ✓ | batch | NA | select | S, F | MADGene link | html, xls | H, M, R, O | web, open | Aug, 2009 | ||||||
trans. | multiple | (17 org.) | source | ||||||||||||||
GATExplorer | Affy expression & | ✓ | ✓ | ✓ | single | probes | genes, | S | Ensembl | html | H, M, R | web, ⇓ | Mar, 2010 | ||||
exon arrays | trans. | ||||||||||||||||
NetAffx ™ | genes, prots., | ✓ | ✓ | batch | select one | select | S, F | UniGene, LocusLink | html, txt | H, M, R, O | web | CND | |||||
probes, other | one | ||||||||||||||||
PLANdbAffy | Affy expression | ✓ | ✓ | single | Affy, Hugo,Ens | Affy, Hugo, | S | RefSeq | html | H | web, ⇓ | May, 2009 | |||||
arrays | Ens. | ||||||||||||||||
probeMatchDB | probes, cDNA, | ✓ | ✓ | batch | select one | select | S | UniGene, Homologene | html | H, M, R | web | 2006 | |||||
EST, gene, prots. | one | ||||||||||||||||
Uniprot | genes and | ✓ | ✓ | batch | genes or prots. | prots. or | S, F | UniProt ID | html | NA | web, API, ⇓ | Jul, 2011 | |||||
prots. | gene | ||||||||||||||||
Onto- | Affy, uniGene clusters, | ✓ | batch | select one | select | S, F | RefSeq, Entrez | html, email | H, M, R, O (58 org.) | web | May, 2009 | ||||||
Translate | Acc num | one | |||||||||||||||
AliasServer | Affy, genes, | ✓ | batch | select one | select multiple | S | custom generated | html, txt | Not Available | Not Available | CND | ||||||
prots. | |||||||||||||||||
MatchMiner | Affy, | ✓ | batch | select one | choose from | S | custom generated | Email (txt,xls) | H, M | web | Sep. 2006 | ||||||
genes | |||||||||||||||||
GeneMerge | genes and | batch | select one | NA | S, F | corr. files | html | 5 org. | web | Apr, 2007 | |||||||
prots. | |||||||||||||||||
BioMart | genes, prots., | ✓ | ✓ | NA | select one | select multiple | S, F | NA | html, txt, xls | H, M, R, O | web, API, ⇓ | depends on DB | |||||
probes, other | |||||||||||||||||
BridgeDb | probes, genes, | NA | NA | ✓ | NA | NA | NA | S, F | Ensembl, other | NA | 36 org. | open source | May, 2011 | ||||
prots., metabolites | |||||||||||||||||
AbsIDconvert | genes, trans., | ✓ | ✓ | ✓ | ✓ | ✓ | batch | select one | select multiple | S | Genomic Sequence | html, txt | H, M, R, O | web, ⇓ VM | Dec, 2011 | ||
seqs., probes | (53 org.) |